| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2596 |
|---|
| Symbol | |
|---|
| ID | 8358756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3182266 |
|---|
| End bp | 3183609 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644964779 |
|---|
| Product | Alpha-L-fucosidase |
|---|
| Protein accession | YP_003122280 |
|---|
| Protein GI | 256421627 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000031745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.128111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAGAC GAATCTTTCT GGCAGCTTCC TGCCTGGTCG TGTGTATGTA TGCAAGCGCA
CAAAAAACAG CGAATGACCC CGCAAAGGAG AAATGGTTTA TGGACCTAGG TTTAGGTATG
TTCATTCACT GGAGCGTGGA TGTCCAGGTC GGAGCGGTGA TCAGTCATTC CATGGCAGGC
GCTTCTGATG AATACCTGGA ACGTTTTACC ACCGAACTGC CCAAAACCTT TAATCCGCAT
AAATTCAACC CGGATGACTG GGCCGTACTC GCAAAACTCG CCGGTATGAA GTACGTCGTC
TTCACTGCGA AACACCACGC CGGCTTCTGT ATGTGGGATA CCAAAACGAC ACCCTTCAAC
ATCATGAATA CCCCGTTTAA GAAGGATGCC ACCCGCGCCA TTTTCGACGC ATTCCGTAAA
CAGGGCATTG CTATCGGAGT GTACTTTTCC CCTGAAGATT TCTATTACCT CTACAAACAT
AAAGTACCGA TCGGCAGAAT GCAGTTGCCA CAACATTTCC CGGAAAAGAA TCCTGGGCTG
ATGGCATATG ACAAATCCCA GCTGAAAGAA TTGCTTAGCA ACTACGGAAA GATCGATTTT
ATCTTTTTTG ATGGTCCGGC AGAGGGGCTG AAAGAATATG CCTGGGAACT GCAACCGGAT
ATTGTAGTCA CCCGCGGACA AATGAACACG CCTGAACAGG AATTGCCGGA GGCTATCATG
CCTGGTCCAT GGGAAGCCTG CTTTACTATG GGTACCGACT GGCAATATAA ACCGACCAAC
GATCCGCAGA AATCAGGTAC AGAAATGATC AACATGCTGA TCGAAACCCG TGCAAAAGGA
GGGAACCTCC TGCTGAACGT CGGACCTAAA CCGGACGGTG AAATCCAGAT AGAACAGGAA
GCCCTGCTCC GTGAACTGGC ACTCTGGAAC CTGGCAAACG GAGAGTCCGT ACACGGTGTA
AGACCCTGGA ACATTGCCCG GGAGGGAAAT ATCTGGTTTA CCCGTGGAAA AGATACGAGT
ACGGTATACG CTTTTGTACC GGGCGGAAAG GACTGGAAAT ATGGCGAGCG AAAGGAACTG
GTGCTGCGCA CCCTGGAAGG CAATCCACAG ACGAAAGTGG CTATCCTTGG ATATGCCAGC
GAACTGGTAG AGTACAAAGA GGGTTTTGAT GCAGGTATTT ATTCACAGTC CACGCCTGTC
GGACTGCTGA TCTCCGCCGT AAACGGACAA CGTTTCTATA CTGACAGGAA ATGGCCTAAT
CCGGTAGTGA TCAGGATTGA AAATGTGAAA TACCGTCCTG TTATCAACAG CTATAAACAA
AGCACCCTTG ATGGTGCGAA ATAA
|
|---|
| Protein sequence | MLRRIFLAAS CLVVCMYASA QKTANDPAKE KWFMDLGLGM FIHWSVDVQV GAVISHSMAG
ASDEYLERFT TELPKTFNPH KFNPDDWAVL AKLAGMKYVV FTAKHHAGFC MWDTKTTPFN
IMNTPFKKDA TRAIFDAFRK QGIAIGVYFS PEDFYYLYKH KVPIGRMQLP QHFPEKNPGL
MAYDKSQLKE LLSNYGKIDF IFFDGPAEGL KEYAWELQPD IVVTRGQMNT PEQELPEAIM
PGPWEACFTM GTDWQYKPTN DPQKSGTEMI NMLIETRAKG GNLLLNVGPK PDGEIQIEQE
ALLRELALWN LANGESVHGV RPWNIAREGN IWFTRGKDTS TVYAFVPGGK DWKYGERKEL
VLRTLEGNPQ TKVAILGYAS ELVEYKEGFD AGIYSQSTPV GLLISAVNGQ RFYTDRKWPN
PVVIRIENVK YRPVINSYKQ STLDGAK
|
|---|
| |