Gene Cpin_2549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2549 
Symbol 
ID8358708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp3119022 
End bp3120044 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content48% 
IMG OID644964732 
ProductABC transporter related 
Protein accessionYP_003122234 
Protein GI256421581 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACAGA TGAACGATCC TATCATACAA CTGAAAGGGT TGACAAAATG CTATGGGAAG 
AAAAAAGCAG TGGATGGTCT TGACCTCGCA ATCCGCAGAG GAGAAATATT CGGTTTATTA
GGACCTAACG GTGCCGGTAA AACCACCACC ATCCTTATGA TGCTAGGCCT CACAGAGCCC
ACAGAAGGCA CCGCGTACGT GTGCGGATTT AATGCTACCC GAGAGCCAAT TGCCGTAAAG
CGTACCGTAG GTTACATGCC GGACAGTGTA GGATTCTACG ATAGCATGAC CGCCCTGGAG
AATCTGCTTT ACATTGGCCG TTTAAATGGT CTTCCGGAGC ACGAAGTAAA GACAAGAGCC
ACAGAAACGC TGGCATTGGT AGGCCTTGCA GGTGACATGA ATAGAAGTAC ATATACCTTT
TCCCGGGGAA TGAAGCAGCG CCTGGGGCTA GCAGACGTAC TAATCAAAAA ACCAGCCGTC
ATTATCCTCG ATGAGCCGAC GCTCGGCATT GATCCCGCTG GGGTGAGGGA ATTTCTCACA
CTAATCAGAC AACTCAGCAG GCAACACGGA ATCACCGTAT TGATCTCCTC CCATCACCTG
CACCATGTAC AGCAGGTATG TGACAGGGTA GGCATTTTCG TAAATGGCAA ACTGGAAGTG
GAAGGCAACA TTGATACCCT TTCCGGAAAC TTACTGGACC GCGAAGGATA CTCTACCACC
GTCACACTTG TCAGGCCCAT TATACAACCA TGGCCGCTTA TGCCAATCTT TTCAGAACTG
GATGCCGTGA AAGAAGTGTC AGTGCAGAAC AACTGCCTTA CCTTCTTCTG CACCCGCGAT
ATCACACCTT CCATTGTACG CCTGCTGGTG GACAATGGAT GCGACATAAC CGGCGTACAT
CAAAAAGATT ACGGCCTGGA TGATATCTAT CAAAAGTATT TTGAAAACAA TGCAGCTGAA
AATACAACTC ATGAAAAGTC TGCCAGTTTC CTTCAAAGGA CTTTCCTTAA AGAACAACCG
TAG
 
Protein sequence
MLQMNDPIIQ LKGLTKCYGK KKAVDGLDLA IRRGEIFGLL GPNGAGKTTT ILMMLGLTEP 
TEGTAYVCGF NATREPIAVK RTVGYMPDSV GFYDSMTALE NLLYIGRLNG LPEHEVKTRA
TETLALVGLA GDMNRSTYTF SRGMKQRLGL ADVLIKKPAV IILDEPTLGI DPAGVREFLT
LIRQLSRQHG ITVLISSHHL HHVQQVCDRV GIFVNGKLEV EGNIDTLSGN LLDREGYSTT
VTLVRPIIQP WPLMPIFSEL DAVKEVSVQN NCLTFFCTRD ITPSIVRLLV DNGCDITGVH
QKDYGLDDIY QKYFENNAAE NTTHEKSASF LQRTFLKEQP