| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2464 |
|---|
| Symbol | |
|---|
| ID | 8358622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3033993 |
|---|
| End bp | 3036371 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964650 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003122153 |
|---|
| Protein GI | 256421500 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0427191 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGA ACTATTTTAA GATCGCATGG CGGAACCTGC TTAAAAATCC ACAGGCTACC
TTCCTGAATC TTGTCGGCTT ATCCACAGGG CTGGCAGCTT TTCTACTGAT TTATTTATGG
GTATACGATG AACTGAACGT TGACAGGTTT CATGAGAAAC GTAGGCAGCT GTTTCAGGTC
ATGGAAAATG TAAAGGATGG CAGAGGTACC ATCACCAATG GGGGAACACC GGCCTTGCTG
GCGGATGCAC TTAATGGTAC AATGCCTGAA ATTGTGTATG CTGCCACCAC CACACCACCG
TCCTGGTTTC CGGAAATCAC TATCTCAACA GGTGAGAAGC CTGTGAATGC CGCTGCACTA
TTCGCAGGAA AGGATTACTT CAATATATTT TCTTATCCGC TGGTACAGGG GAATAAAGCG
ACCGTACTGG CAGACAGGGA CGGTATGGTC ATCTCGGAAG CGCTGGCCAT GAAGCTATTC
CACACTACCG AAAATGTGAT TGGTAAAACC ATCAGCTGGC AGATACAGGA GTTTAAAAAA
CACAGTACTG TCTCCGGCGT GTTTAAGGGT ACTCCCGCTA ATTCTTCTAT ACAGTTTGAC
TTTGTATTAT CTTTTGAGGC ATTTAAGGAA TTGATGGGCA TAAAGGGCGT GTTAGACAGT
CAGAATAGCG ATGGGCCCTT TTTCACTTAC CTGGTGTTAA AGAAAGGGAC GGATGTAAAC
GCTTTTAATA AACAACTGAG TGAATTCCTG AAAACCAAAA GTAAGGGTAT TCCCCGTGAT
CTTTTCTTAC AGCCCTATGC AGACAATTAT CTCTACAGTG AATTTAAAAA TGGCAAGGCC
GCAGGGGGCA GGATTGCTTA TGTGAAATTG TTCTCATTGA TTGCGGTACT GATCATGCTG
ATCGCCTGTA TCAATTTTGT TAATCTCTGC ACCGCGAAAT CTGCCGGCAG AATGAAGGAG
ATCGGTATCC GGAAGTCGAT GGGCGCACGT CGCAAAACGC TTGTTTTTCA GTTTATGGGA
GAATTCATGT TGCTGGTCTT CCTGGCACTG TTGATAGCCC TTTTATTGGT GATATGCCTG
CTGCCGGCCT ACAATGAGAT TACTGGCAAA CAGGTAGCTT TACGCCCCGA TCTTAACCTG
ATGCTGTCTG TACTGGGTAT TACATTTATT ACGGGACTTA TCGCAGGCAG TTATCCTGCT
TTTTATCTTT CCGGGTTTAA TCCGCTGGAA GTCCTGAAAG GACGCATATT GAAAGGAAGC
GAAGGTCAAC TATGGGCACG CAAAGGGCTG GTGATATTCC AGTTTACGAT GTCTGTTGTG
TTCCTGATAG CTGTTATTAT CGTTTATCGT CAGCTGAATT ATATACAAAA TAAAAAGCCG
GGTTATGACA AGGAACATGT CGTTTACTGG AATGCAACCG GTAAGGTACC CGCTGATATG
GATGGATTTT TGTCAGCAAT AAAGCAGATC CCAGGTGTCG CCAACGCATC GGGAATGGTG
GCGAATGTGC TTTCTACGGG ACCAGGTGTA CCTGTGAAGT ATACGGTAAA TGGACGGGAG
GAATTGATCG CTTTCAACTC CCTGCAGGTC TATTATGGCA TGATTGAAAC CCTGGGGATT
GAAATGGCCG CAGGACAAAC CTTTTCCCGA AATTTCGGCG CAGAGACTGA TAAAATCATT
TTCAACGAGG CCGCGATTAA AGCATTGGAG ATTAAAGACC CGGTAGGAAA GATCATTGAT
TTCCGGGGCA AAAAGCTCCA GATCAAAGGA ATGATCAAAG ACTTCCATTT CCAGTCATTG
CACGAAAAGA TCAGACCCAT GTATATCATA CCGGATCAGC TGGTAGGAAC AATCATGGTA
AGGACAAAAG CAGGTATGGA ACAGGAGGCT TTAGCAAGGC TGAGTGCTTT TTACAAAGAC
TATAACCCGG ATTTTCCATT TGAATATAAA TTCCTGGATG ACGATTACCA GGCGCAGTAT
ATAGCAGAAA AAAGAGTCGC CACTTTGTCT AAATACTTCT CGGGATTAGC GATGTTGATA
TCCTGCCTGG GATTACTTGG ACTGACAGCT TTCACCCTGG AAAAAAGAAG CAAAGAGATC
AGTATCCGCA AGGTGCTGGG CGCTACCGGT AATAATATTG TATTGATGTT TTCTAAGTCA
TACCTGGTAT TTGTATTATT GGCCGCATTA CTGGCGGTGC CACTGGGATG GTGGATCATG
AATAGCTGGT TACAGGGCTT CGCATACCAT GTTAATATCG GTGTAGATGT TTTTCTGATT
GCCTTAGGGG CTGTATTACC AGTTACTTTA TTATCTGTGA TTTTTATCGT AGTCAGGGTG
GCCTGGGCAA ATCCGGCGAC GAGTTTAAAG GCAGAGTAG
|
|---|
| Protein sequence | MLKNYFKIAW RNLLKNPQAT FLNLVGLSTG LAAFLLIYLW VYDELNVDRF HEKRRQLFQV
MENVKDGRGT ITNGGTPALL ADALNGTMPE IVYAATTTPP SWFPEITIST GEKPVNAAAL
FAGKDYFNIF SYPLVQGNKA TVLADRDGMV ISEALAMKLF HTTENVIGKT ISWQIQEFKK
HSTVSGVFKG TPANSSIQFD FVLSFEAFKE LMGIKGVLDS QNSDGPFFTY LVLKKGTDVN
AFNKQLSEFL KTKSKGIPRD LFLQPYADNY LYSEFKNGKA AGGRIAYVKL FSLIAVLIML
IACINFVNLC TAKSAGRMKE IGIRKSMGAR RKTLVFQFMG EFMLLVFLAL LIALLLVICL
LPAYNEITGK QVALRPDLNL MLSVLGITFI TGLIAGSYPA FYLSGFNPLE VLKGRILKGS
EGQLWARKGL VIFQFTMSVV FLIAVIIVYR QLNYIQNKKP GYDKEHVVYW NATGKVPADM
DGFLSAIKQI PGVANASGMV ANVLSTGPGV PVKYTVNGRE ELIAFNSLQV YYGMIETLGI
EMAAGQTFSR NFGAETDKII FNEAAIKALE IKDPVGKIID FRGKKLQIKG MIKDFHFQSL
HEKIRPMYII PDQLVGTIMV RTKAGMEQEA LARLSAFYKD YNPDFPFEYK FLDDDYQAQY
IAEKRVATLS KYFSGLAMLI SCLGLLGLTA FTLEKRSKEI SIRKVLGATG NNIVLMFSKS
YLVFVLLAAL LAVPLGWWIM NSWLQGFAYH VNIGVDVFLI ALGAVLPVTL LSVIFIVVRV
AWANPATSLK AE
|
|---|
| |