| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2458 |
|---|
| Symbol | |
|---|
| ID | 8358616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3023992 |
|---|
| End bp | 3026718 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644964644 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003122147 |
|---|
| Protein GI | 256421494 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGC GCGTAATAGT TTTGATCATT ACTTTACTCT ATCATATGAC TTCCTTCGCT
CAGTCCTTTA CCCTGAAAGG ATTGTTGAAG GATACGAGTT TACAGCGCCC GCTTTACAGA
GGATCCGTAG TATTGTTGCA GGCCCGGGAT TCTTTTATTG TATCAGATAC CCGTGCCGAT
AAAGAAGGTC GCTTTGTATT TAATCACCTG AACGATACTG CCAACTATAT CCTGTTTTTC
TCTTATCCGG GTTATGCTGC CTATTCTCAT AAGATCACTG CGGTGAAACC TGTGGATGGT
GTCCTGGATA TGGGAACGGT AAGTTTGTTA TTGAAGGAGA AGCTGCTCAA GGAAGTAGTC
GTCAAGTCTC AGACGGCCAT CATCAAGATA AAAGGAGATA CGACAGAATT TACGGCGGAT
AGTTTTAAAG TGCAGGCAAA CGCCTCTGTA GAGGAGCTGT TAAAGCAGCT TCCTGGTCTG
CAGGTAGACC AGTACGGTAA CATTACCGTT CATGGGAAGA AGGTCAAAAA GGTATTGGTG
GATGGAGAAG AATTCTTTGG TGATGATCCG ACCCTGGTCA CCCGTAACCT GCGTGCTGAT
ATGATTGACA AGGTACAGGT TTATGATAAG AAGTCTGATG CAGCTGTCTT CACAGGTATC
GATGATGGTG TGAAAGATAA GACCATTAAT CTGAAGATTA AGGAGGATAA GAATCATGGC
GTATTTGGTA AGGTCGAACT CGGTGGAGGC ACAGATGAAC ATTATAATGT GCAGGGTATG
CTGAATGCAT TTAAAAACAA ACGTAGACTA TCAGTGTATG GTACTAACGG TAATATTGGT
CGTACCGGTC TGGGAGCAGC GGACAGGCAG AAGATAGGCA CAGATAATGA TGGTGCTGAA
AACTATGATG ATAAAGGTAT TCCTACTGTT ACCAGTGCAG GCGCGCATTA TGATAATAAG
TGGAATAAGG ATCAGCAGTC TTTTAATGGC AATTACAAGT TCAATACAAT GATGGTGAAT
GGGGAGGATA TCGTGGTGTC GCAGAATAAT CTTCCTACCG GTCTGATACT AGGTAACTCC
ATCAATAGAT TTGATAACCG GAATACCCGT CAGTCGGCCA ACGGAAAGTA CATTTTCAAA
GTAGATACAT CCACTACGAT TACTGCATAT GCAGATGGCG CAGTCACTGA TAACAGGACT
GCCAGTTATG GCAATACACA GAATTTCCGG GGAGATAGCA GTATGATCTA TAATAACGAA
TCAAGCGATC GTAATGACTA TCATCTCAGA TCCTATAATG TAAACCTGGC CTGGGAAAAA
CGGCTTAACA AGGCTGGTCG TACGATCTCC CTGTATCTGA ATAATAACTT TTCAAATGAT
CATTCGTCAG GAGAGAACCG GTCAAATAGT GACTATTATG ATTCAACCGG CACAAAAGAC
AGCACGGCGC TTTTGTATCT TGGCAGACGT ACAAATGACG ACTGGCGTAC CAACACCCTG
AAAGCGATCT ATACATCGCC GATATCGCGA AAGTTGTCGC TGGTTATTAA CTATCAGATC
GAAAACAACC TTAGTCATGA TGATAAGCGT TCTTATAACC TGGTAGAGAA TCCGGCGGGA
AAGGAGGAGG ATGGCGCGTT TAGCAGTAAG ATGAATAGTA ATACCTGGTC TAACCAGGGA
GGGGTTGCTA TTAATTATAC AGCGCCCAAA CTAATTCTGA AAGCGGGGAA TAATATTCGT
TCGATAGCAA TGGACCTGGA GAGTGAGTTT GATAACTACC GGCTGAAAAG GACTTTCCTG
AACTGGAATC CCAGCGCAAG TATACAATAT ACCGTGAAGC AATATTCAGA AGTCCGTCTG
AATTATGTGG GTAGCAGTAT CAACCCGGAA AAGGCACAGT TACTGCCATT AAAGTTTAAT
AATGGACAGC TTGTTACTTA CCTGGCTAAC CCGGACCTGT ATAATAGCTT TAGCCATAAG
ATAAGTGGTG ATTATAGCGC CGCGAAAGTC GTTTCAAATG TATATACTGG TGGTAACGGA
AGTGTGACCT TTACGACTAA CCCGATTGCG CAGGCTATTA ATGTATCCTC TTCCGGTAAG
TATATTTACA GGTTTGTGAA TATGCCGGGA TATACCAATA TGAATTACGA TCTGATGGCT
TATTATGGTC GCCAACTGCC ATTTAATATA CAGATGATCG CTGCCCTGAA TACCAGTGGT
GGAAAGACTT TCAATCTGAC AGATGATGAT GTGAATAAAC TGACGTATCG TACATATGGC
GCCGGCGTGG AAATCTATAA ATCCAAACAG AAAAAATACA GTAGTTATCT GCTTGCAAAG
GCAGGGTATA ATATTAATAA ATCTTCTTTG CAACCAGACA CGAAGAATAA TTTTCCGTTC
ATTGAAATCA GACCAAGTCT GGCAATTTAC TTTCTCAGGA AATTCGAAAT ACATACAGAT
GCCAATTATC TCTGGCAACA GAAGTCGCAG GCGTTTAGTG ACAATTTCAG CCGTGTGATC
TGGAATGCCT GGTTAGGTCG TACTTTTCTC AAACAGGATC AGTTGACCAT CAAGATATCC
TGTAATGATA TCCTGAACCA GAATAACGGG TATTCCCGTA CAGCCAATAA TAACTTCTTC
TCAGAGAACA GATATACGAC CATCAGACGA TTTTTTATGT TAGGTGCGAC GTGGAATTTT
ACCAAATTCA GCACCATAAA ACAATAG
|
|---|
| Protein sequence | MRKRVIVLII TLLYHMTSFA QSFTLKGLLK DTSLQRPLYR GSVVLLQARD SFIVSDTRAD
KEGRFVFNHL NDTANYILFF SYPGYAAYSH KITAVKPVDG VLDMGTVSLL LKEKLLKEVV
VKSQTAIIKI KGDTTEFTAD SFKVQANASV EELLKQLPGL QVDQYGNITV HGKKVKKVLV
DGEEFFGDDP TLVTRNLRAD MIDKVQVYDK KSDAAVFTGI DDGVKDKTIN LKIKEDKNHG
VFGKVELGGG TDEHYNVQGM LNAFKNKRRL SVYGTNGNIG RTGLGAADRQ KIGTDNDGAE
NYDDKGIPTV TSAGAHYDNK WNKDQQSFNG NYKFNTMMVN GEDIVVSQNN LPTGLILGNS
INRFDNRNTR QSANGKYIFK VDTSTTITAY ADGAVTDNRT ASYGNTQNFR GDSSMIYNNE
SSDRNDYHLR SYNVNLAWEK RLNKAGRTIS LYLNNNFSND HSSGENRSNS DYYDSTGTKD
STALLYLGRR TNDDWRTNTL KAIYTSPISR KLSLVINYQI ENNLSHDDKR SYNLVENPAG
KEEDGAFSSK MNSNTWSNQG GVAINYTAPK LILKAGNNIR SIAMDLESEF DNYRLKRTFL
NWNPSASIQY TVKQYSEVRL NYVGSSINPE KAQLLPLKFN NGQLVTYLAN PDLYNSFSHK
ISGDYSAAKV VSNVYTGGNG SVTFTTNPIA QAINVSSSGK YIYRFVNMPG YTNMNYDLMA
YYGRQLPFNI QMIAALNTSG GKTFNLTDDD VNKLTYRTYG AGVEIYKSKQ KKYSSYLLAK
AGYNINKSSL QPDTKNNFPF IEIRPSLAIY FLRKFEIHTD ANYLWQQKSQ AFSDNFSRVI
WNAWLGRTFL KQDQLTIKIS CNDILNQNNG YSRTANNNFF SENRYTTIRR FFMLGATWNF
TKFSTIKQ
|
|---|
| |