Gene Cpin_2448 details

Gene Information

• Locus tag: Cpin_2448
• ID: 8358603
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: -
• Start bp: 3010180
• End bp: 3013605
• Gene Length: 3426 bp
• Protein Length: 1141 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 644964631
• Product: PA14 domain protein
• Protein accession: YP_003122137
• Protein GI: 256421484

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.84904
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAAGA AAATCCTTTA CACGCTACTT GTCGTATGCC TGCCCGTGCT CTTGTCACAG 
GCACAGACAC TACGTGTACC AGGCAGTCCT TATCCGGTAT CTGCTGTACC CGACAGTGTA 
TTTCTCACTT CCGAGAATTA TACTGTCTCC GAACGCGTCG CACTGCAAAC ACTGCAGGGT 
GTGATCGCAC AAACCAAACC TGCCATCCTG CGCGACCTGT CCGGCCACCG CGCACTCGTA 
GAGAAAGCAG GTATTAAAGT CAATGACGCT TATTACAACA ACTTCCCTGG ACTCCTTGCC 
TTCTTCGCCA ACAGGCTCTC CGGCTACATT CTCTGTAACC AGAAAGACCG TTCTACCAAT 
GTGGCCATTT CCCTGGCAGG TGTGATGAAT GCCGTAGCTA TTCCTGCGGA TATTGAGCAG 
GCAGCCATTA ACGCCGGACT CACAAGATTG CTGGACGTCA GAGCCAGGGA CGAGGCATGG 
GCATTGGCCA ATTATGGTAA CCTGTTCAGT AAACAGATTG CCACCTATCA GCAAAGCTCC 
GATGACCGCG TATCTTTTAT GGGCGATTAC AGCGCTTATA CAAAAGCCTT CCAGTTCTGG 
GACAACTCTC CTACCGGTTC AATCGCTAAC AGTGCTTACA ACCGTATGAA CAAAGGAGCG 
ACTTTCTTTG GCTGGGGGCC GGAAGAATAT GGTACGGTGG AACAACTTTC CCTGAAATCC 
ATGTCTATCA TTCCTTCTGA CTGGGCAGCT AATTTGTCCA CACTCAGTAA TATTCCGGCA 
AAGACGAAAG TCTTCAAACA GAAAGAACCG ATCAAACCAT TCGAAGTAAA AACAGGAGTA 
CACACTGTCT GCTTCGTCAT CACTGACGGT GATAACGTAC AATGGTTACT CGGCTCCCAC 
GACAATATCA ATAACTGGAA TAATCCTGCG CGTGCGCATG TCAATCTCGG ATGGACCATC 
TCTCCTTCCC TTGCAGAACT GGCGCCAGCT GTGTATGAAA AGTATGTGGA CAACTGTCTC 
ACCACGCCTG ATGGCAGAAA TGTGCTCATT GCCGGTCCTT CTGGTAAAAG CTATTTCTTC 
CCTGGGCGTA TGCCTGATGC AGACCTTGAA ACAGAGTCAA AGCTGCTGAA CAGCTACATG 
AAAAAAGCAG ACCTCCGTAT TGTCAATATC ATTGATGCTG ACGACAGCGA CAATGATCCA 
TCTTCTTACC TTAAACAGGA TAATATCGAC GCATTATTCT ACTACAGTTA TGGCGCTAAC 
TATACCGGTC GCCACGGACA GATAGACTGG TACAATGATA AACCTTCCAT TGGCGGCAGA 
TATACCCTCT GGGGTACTTT GTCTTCTCCT CAATCACTGG CCAATCAGCT GAACCAGGCT 
TCTACCAACA TCAATTCCGC CGATGGTTAT AGCCTCGTAT CAGTACATAT CTGGTCAAGA 
GATGTGGATG ACGTACAGGA CTGTATCAAT CGTCTCGGAC CTAACGTACG TGTAGTAGCG 
CCTGATGAAT TTGTATGGCT GATCCGCAAG AACCTCAGAA ACCTGCCGGT AGGTACCGGT 
AACGGACTGA AAGCGGAATA CTATGCCGGT TATCATAAAG ATGTGCTGAA GTATACACAG 
ACGGATGGTA ATGTGGATTT CGACTGGGGT AACGGTTCTC CTGATCAGGC ACAGCTGGGT 
GTTAACCAGT TTTCCGTAAA ATGGTCCGGA CAGGTACAAC CATTGTATTC TGAACCATAC 
ACCTTTCATG TCTATTCTGA TGATGGAGTA AAACTCACTG TCAACGGACA AACCCTGATT 
AATGATTATG AGACACAGGG CGCTTATACC CGTACCGGCA CAATTACACT TATCGCCGGA 
CAGAAATACA ACATTGAATT GGAGTATGGC GAAGGGAATG GGGATGCGTT CTGTCACCTG 
CAATGGTCCA GTACTTCCCA GGCGCGGCAG GCGATTCCAA AAGCACAGCT GTATAGCAGA 
CCAGATACCA GTAATGGCCC TGTAACTGTC TATGAAAATG CGCAGTACGG CGGCTTTCAT 
GCAGGCTTGC CGATCGGTGC GTACAAACTG GCAGGTCTGC AACTGAAAGG TATACAGAAC 
GATGAAATCT CTTCCATCAA AGTAGCAGAA GGGTATAAAG TTGTACTGTT CGAACACGAA 
AATTTTGCGG GCGATTCCAT CGTAATAACT GCCAACAGTC CTTCACTCGG CAGCAGCTGG 
GATGAAAAAG CCAGCTCTGT CAAAGTACTG GCCAATGGTA ATCCCAATCT GGCAGGTTCT 
TATACGATCA GACACGTGGC CAGTAACCTG TTCCTCGATG TACGGGGCGG CTTAGGCAGC 
ACCGGTGATG GTTCCCCTAT ACAACTATGG ACGGGCACCA ACGCGGCCAA TCAGACCTTT 
ACACTGAAAC ACCTGGGTGA GGGACGTTAT ACGATTACGG CTTATCACAG TGCAAAAAGC 
CTGGACATTC CGCAATCCAG TATGGATGAA GATGTGAGTC TCTGGCAATG GACAAGTCAG 
GATGCAGCCA ATCAGCAATT CATTGCGATA GCCGCTGATA GTGGTTATTA CAAATTCATC 
TCTGCACTGA GTGGCAAAGT ACTTGCTACA TTGAATAACA GTACAGCACC GGAAGCGAAA 
GTAGTACAGC ATACCGGTAA TGGTCAGGCC AGCGCCAGAT GGCAGCTGTT ATCCGTACCG 
ACTGTCGGTA ACGGCAACGG CCTTAGTGGT AATTATTACA ATGGTAAAAA CTTTGAGACC 
TTCGTTTTCA GCCGTGTTGA TAAAACAATA GATTTTGACT GGGGAGAAGG CGCTCCGGGT 
ACAGGCATTA CCAATGATAG TTATAGCATC AGATGGACCG GTAAAGTAGA ACCGAGATAT 
ACGGGTACTT ACACCTTTTA CATGACCAGT GATAACGGCC GCCGTCTCTG GGTCAATAAT 
CAGCTGATCA TCGACAAATG GCTGAGCGAC TGGGATATTG AATACTCCGG TACCATTAAT 
CTGGTAGCAG GACAACAATA CGATATCAAG GTAGAATATT TTGAAGACTT TGGCGGCGCC 
AACTGTAAAC TGTCATGGTC AGGTTCGAAT CAGGGTAAAG AGATTATTCC GAGAAACCAG 
CTCTATGCCA CTTCTGCTGC ACTTACTGCC GCTAATCTGG CACTTGCAGG TAAGGATGCG 
CATACTATGG AAAAAAATAT CCTCCTGTAT CCTAATCCGG CACAAAGCAG CGTTCGCCTG 
CAGTTCAATG CGAAGCAGGC AAGAATGAGC ATTTTTGATG CAGTGGGTCG TCAGGTAGCG 
CCAGCAAGGA TTGTATACGC CGGACAATCG ATCGATGTCA GCAATCTGCC AACAGGCGTC 
TACCTGATAC AACTCGATAT CAATGGTACC AAAACAGTCA AACACCTGGT AAAAAGCGCT 
GAATAA 

 

Protein sequence

MKKKILYTLL VVCLPVLLSQ AQTLRVPGSP YPVSAVPDSV FLTSENYTVS ERVALQTLQG 
VIAQTKPAIL RDLSGHRALV EKAGIKVNDA YYNNFPGLLA FFANRLSGYI LCNQKDRSTN 
VAISLAGVMN AVAIPADIEQ AAINAGLTRL LDVRARDEAW ALANYGNLFS KQIATYQQSS 
DDRVSFMGDY SAYTKAFQFW DNSPTGSIAN SAYNRMNKGA TFFGWGPEEY GTVEQLSLKS 
MSIIPSDWAA NLSTLSNIPA KTKVFKQKEP IKPFEVKTGV HTVCFVITDG DNVQWLLGSH 
DNINNWNNPA RAHVNLGWTI SPSLAELAPA VYEKYVDNCL TTPDGRNVLI AGPSGKSYFF 
PGRMPDADLE TESKLLNSYM KKADLRIVNI IDADDSDNDP SSYLKQDNID ALFYYSYGAN 
YTGRHGQIDW YNDKPSIGGR YTLWGTLSSP QSLANQLNQA STNINSADGY SLVSVHIWSR 
DVDDVQDCIN RLGPNVRVVA PDEFVWLIRK NLRNLPVGTG NGLKAEYYAG YHKDVLKYTQ 
TDGNVDFDWG NGSPDQAQLG VNQFSVKWSG QVQPLYSEPY TFHVYSDDGV KLTVNGQTLI 
NDYETQGAYT RTGTITLIAG QKYNIELEYG EGNGDAFCHL QWSSTSQARQ AIPKAQLYSR 
PDTSNGPVTV YENAQYGGFH AGLPIGAYKL AGLQLKGIQN DEISSIKVAE GYKVVLFEHE 
NFAGDSIVIT ANSPSLGSSW DEKASSVKVL ANGNPNLAGS YTIRHVASNL FLDVRGGLGS 
TGDGSPIQLW TGTNAANQTF TLKHLGEGRY TITAYHSAKS LDIPQSSMDE DVSLWQWTSQ 
DAANQQFIAI AADSGYYKFI SALSGKVLAT LNNSTAPEAK VVQHTGNGQA SARWQLLSVP 
TVGNGNGLSG NYYNGKNFET FVFSRVDKTI DFDWGEGAPG TGITNDSYSI RWTGKVEPRY 
TGTYTFYMTS DNGRRLWVNN QLIIDKWLSD WDIEYSGTIN LVAGQQYDIK VEYFEDFGGA 
NCKLSWSGSN QGKEIIPRNQ LYATSAALTA ANLALAGKDA HTMEKNILLY PNPAQSSVRL 
QFNAKQARMS IFDAVGRQVA PARIVYAGQS IDVSNLPTGV YLIQLDINGT KTVKHLVKSA 
E