| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2407 |
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| Symbol | |
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| ID | 8358562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 2962233 |
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| End bp | 2963447 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964593 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003122099 |
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| Protein GI | 256421446 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.17617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.530152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATTAA CTTCCTCCTA TGAACTAAAG ACAGCATTTG CCTATGCCAG GAGTTTCAGC
CTGGAGAGGA AGCTTTATTA CATTGATAGC CAGATGATAT TGCTGGGTAT CCTGGACTCT
TACGCCAGCG ATGTAGCCAT CGAGGCTGCC GACAGGGAAA AGATGCTCCA GTGGTTACAC
GCACTGGACT GGGAACAGCG GCCCGGTGCC CCTATTCCTA CAGGCAACAA GCCCAAGGTG
CCTATCATGA CGGAAGCAGA AAGGATGCTG GAAAATGCCA CCTGGTTCCA GAAAAAACTA
GGGGATGAAC AACTCCATCC ACAGCACATT ATCCTTTCAA TACTCACCAT AGAAAATCGT
TGTCAGTACA AATTCAAGTC CCTGGGTATT GTCTTTGAAA CCTACCTGGA GCAGCTGCTT
TCACTACGAA AAATGAAAAC GGAGGTGCCT TTCCGCAGTC CGCGGATCAA GACTTCCTAC
ATCAGTTTTT TCCATCCTTT TTTACAATTG TTTTATGGTC CGCAGCAGAA GAAAAATGCG
GTGGAAAGAT ACTTCAGCGA AGCGCAGTCA TTGCTGCAAT ACAATGATAT TCATAAGTGC
CGTACTTTAT GTCACCTGGT ATTACAGATG CAGCCTGACC ATGTCAATGC ATTGTGGTTA
TCCGGCGTGA CCTGGAGAGT GGAACGTAAC TTTCAGAAGG CGCTGCCCTT CTATGACAAA
GTACATCATA AACATCCACA GCATACCGGC GTACTGGCCG AAGTAGCGCA TTGCCACAGT
GAGATGGGCA ATCATGAATG GGCGATGAAA CTGTATGCAC ATGCATTGTC GCTTAATCCG
GGATCTTCCG AATTATTGAA CAGTCTGGGG TTTGAATGTA TTCACCTGGA ATTGTATGTG
GAAGCGATCT CTTATTTCGA TCAGGCAATC GCGTATGATG AAGAATGTGC CTATGCGTAT
AACAACAAAG GTTATGTGCT GATGCACCTG GGATTTCCGG TAGCAGCCAG AGAACTGATA
CTCAAATCAT TGCAGATCAA TAAAGGAAAT GCTTATGCTT ACAGGAATCT GGCTTTATTA
TCCCTGAAGG AACAGGATGT GGAGACGGCC AGGGAGATGC TCCAGAAGGC GCAACGCTTT
CACTTCAAAC GCAATTACGG AAATGAAGTG GAAGAGTTAT TACGCCGTCT GGATACTCAA
AAAGCTACTT CGTGA
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| Protein sequence | MLLTSSYELK TAFAYARSFS LERKLYYIDS QMILLGILDS YASDVAIEAA DREKMLQWLH
ALDWEQRPGA PIPTGNKPKV PIMTEAERML ENATWFQKKL GDEQLHPQHI ILSILTIENR
CQYKFKSLGI VFETYLEQLL SLRKMKTEVP FRSPRIKTSY ISFFHPFLQL FYGPQQKKNA
VERYFSEAQS LLQYNDIHKC RTLCHLVLQM QPDHVNALWL SGVTWRVERN FQKALPFYDK
VHHKHPQHTG VLAEVAHCHS EMGNHEWAMK LYAHALSLNP GSSELLNSLG FECIHLELYV
EAISYFDQAI AYDEECAYAY NNKGYVLMHL GFPVAARELI LKSLQINKGN AYAYRNLALL
SLKEQDVETA REMLQKAQRF HFKRNYGNEV EELLRRLDTQ KATS
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