| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2405 |
|---|
| Symbol | |
|---|
| ID | 8358560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2960666 |
|---|
| End bp | 2961286 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644964591 |
|---|
| Product | fatty acid hydroxylase |
|---|
| Protein accession | YP_003122097 |
|---|
| Protein GI | 256421444 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3000] Sterol desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0585006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.477297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA GACATTACGT TTCCAACTCT CATGAGTCTA CTCAGATGTT TAAGAGTAGC
CTTTTTGAGA AGCTATCAAA AGTTCATTTC AGCGTTCCGC TGTTTTTATA CATCCCCGTT
ATCGCCTGGT GCTGCTGGAC AGCCCTGTTT GTAGAGCAAT CCGGTGTAAT CCTCTGGGCC
CTGTGCGTAG CAGCGGGTCT GTTCGTATGG TCATTTGTGG AGTATGTGAT GCACCGCTTT
GTATTCCATT TCGAGCCATC CTCTAAATGG GGCAGAAGAC TGCACTTCAT TTTCCATGGT
GTACACCATG ATTATCCAAA CGATGCACTG CGCCTGGTAT TGCCTCCTTC TGTGAGCATT
CCACTGGCGA CAGGCTTCTT TTTTCTGTTC AAGAGTTTTA TACCTGAAGT ATATTTCTAT
GGTTTCTTTG CAGGCTTTAT AGCCGGATAT CTTTTCTACG ATATCTCCCA CTATGCCCTG
CATCATTTCA ATTTCAAAGC CAGGTTCTGG AAGAAGTTAA AGAAACACCA CATGATGCAT
CATTATGCCG ATGCTACCAG GGGATATGGC GTAAGCTCAT CCTTCTGGGA CAAGATCTTC
AGGTCAGATT TTCAAAAGTG A
|
|---|
| Protein sequence | MSNRHYVSNS HESTQMFKSS LFEKLSKVHF SVPLFLYIPV IAWCCWTALF VEQSGVILWA
LCVAAGLFVW SFVEYVMHRF VFHFEPSSKW GRRLHFIFHG VHHDYPNDAL RLVLPPSVSI
PLATGFFFLF KSFIPEVYFY GFFAGFIAGY LFYDISHYAL HHFNFKARFW KKLKKHHMMH
HYADATRGYG VSSSFWDKIF RSDFQK
|
|---|
| |