Gene Cpin_2363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2363 
Symbol 
ID8358518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2905691 
End bp2907037 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content47% 
IMG OID644964549 
Productnucleotide sugar dehydrogenase 
Protein accessionYP_003122055 
Protein GI256421402 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1004] Predicted UDP-glucose 6-dehydrogenase 
TIGRFAM ID[TIGR03026] nucleotide sugar dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000065452 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAA TCGTAATTGG TACAGGATAC GTAGGGTTGG TTACCGGCGC CTGCCTCGCA 
GAAGTAGGTA CGCAGGTAGT ATGTGTGGAT GTTAACGCCG AGAAGATCAA TAACCTCAAA
AACGGCATTT TACCTATTTA TGAACCGGGT CTCGAAGAGA TCGTTACCCG TAACTATAAC
AACGGCCGTC TGTCATTCAG CACTAGTCTT GCTGAAGTGA TCCCTGGTGC GGATATCGCG
TTTATCGCGG TAGGAACGCC TCCGGGTGAA GATGGTAGCG CTGATCTGCA GTATGTACTG
CAGGTGGCAA AAGAAATCGG TACACATATG ACCGATTACC TGGTAGTGGT GACTAAGAGC
ACTGTACCTG TTGGTACTGC TGTGAAAGTG AACAGGGAAA TCAAACAGGC AATGATGGAC
AGAGAAGCAC TGATCGATTA TGATGTTGCT TCTAATCCTG AATTCCTGAA AGAAGGTGCG
GCTGTTCAGG ACTTCCTGAA ACCTGACCGT ATCGTGGTAG GTGTAAACAC CGACAGGGCG
AAAGAAGTAC TGGAGCGTCT GTATCATCCA TTCCTGCTGA ATGGCCGTCC GATCATCTTT
ATGGACATCG CATCCGCAGA AATGACCAAA TATGCAGCAA ACGCCATGCT GGCCACTAAG
ATCTCTTTCA TCAATGATAT CGCAAACCTC TGCGAACTGG TAGGCGCTGA TGTGAATAAA
GTGCGTAAAG GTATCGGTAG CGATGCGAGA ATCGGTAACA GCTTTATCTA TCCGGGTATT
GGTTACGGTG GTTCCTGCTT CCCTAAAGAT GTGAAAGCAC TGGTACGTAC CGGTATGGAT
TATGGTCACG GACTGCGTAT CCTGGAAGCG GTAGAAGCAG TAAACAATGA TCAGAAACGT
GTATTGTTCA ATAAGATCAA CAAACATTTT GATGGTCTGC TGAAAGATAA AACATTCGCA
GTATGGGGGC TCTCTTTCAA ACCTGGTACT GATGATATGC GCGAAGCTTC CAGTCTGGTA
CTGATCGAAG CATTGCTCGA AGCAGGTGCA AATGTGAGAG TATTTGATCC GGTAGCGGCG
CATGAAGCGA AGAAGACACT GAATGACAGC GTAACCTGGG CAACTGACCT GTATGACGCT
GCTGACGGTG CTGACGCAGT ATTGCTGGTG ACAGAATGGA ACGAATTCCG CCTTCCTGAC
TGGAACCGCA TTAAACAATT AGTAAAAACC CCTGTTGTAT TTGACGGCAG GAACATTTAT
GATAACACAT ATCTTGAGAA AAGCGGTTTT ATCTGTTACA GCATTGGTAT CTCCCAGCCG
GCAGTGAGCG TACTCTCCAG AAGTTAA
 
Protein sequence
MKAIVIGTGY VGLVTGACLA EVGTQVVCVD VNAEKINNLK NGILPIYEPG LEEIVTRNYN 
NGRLSFSTSL AEVIPGADIA FIAVGTPPGE DGSADLQYVL QVAKEIGTHM TDYLVVVTKS
TVPVGTAVKV NREIKQAMMD REALIDYDVA SNPEFLKEGA AVQDFLKPDR IVVGVNTDRA
KEVLERLYHP FLLNGRPIIF MDIASAEMTK YAANAMLATK ISFINDIANL CELVGADVNK
VRKGIGSDAR IGNSFIYPGI GYGGSCFPKD VKALVRTGMD YGHGLRILEA VEAVNNDQKR
VLFNKINKHF DGLLKDKTFA VWGLSFKPGT DDMREASSLV LIEALLEAGA NVRVFDPVAA
HEAKKTLNDS VTWATDLYDA ADGADAVLLV TEWNEFRLPD WNRIKQLVKT PVVFDGRNIY
DNTYLEKSGF ICYSIGISQP AVSVLSRS