Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2250 |
Symbol | |
ID | 8358405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 2768414 |
End bp | 2770969 |
Gene Length | 2556 bp |
Protein Length | 851 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644964436 |
Product | TonB-dependent receptor |
Protein accession | YP_003121942 |
Protein GI | 256421289 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAAAT CATTACTCTT CCTTATGCCA ATTTTACTTT TGGCCGGCAC GGCATTTTCT CAGGATGCCG TTGTAGGCGT GATAAAAAAT GGTGAGGGAA CCTCAGTTGT GGGGGCAACT GTAGTAATCA AGGGCACCAA TGTTCACGCT ATTGCAGATA CAAGCGGACG ATTCAGTATT CCATTGCGGA GGGCGTTTCC CTTCACCCTG TTAATCAGTT CACTGGGATA TAAACTGGAG GAAGTAAAAC TGACCAGCCT CCCTACAGGT CCGCTGACTA TCACCTTATC CAGCGATAAC AGTCTGTCGG AAGTCGTGAT CTCTTCCCGC CGACGCCTGG AAACCGCGCA GCAGGTACCT ATTCCGATCT CCGTAATCAG CGGTTCACTG GTTGCAGATG CCGGCGCCTT CAACGTTAAC CGTCTGAAAG AGATTGTACC TACCGTACAA TTATATTCTT CCAATCCCCG GAATACGACC CTGAATATCC GTGGTGTCGG ATCGACTTTT GGTCTGACAA ATGATGGTAT TGACCCGGGT GTGGGTTTCT ATGTGGATGG CGTGTATTAT GCCCGTCCGG CAGCGACTAC GCTTGACTTT ATTGATATAG AACAGGTAGA GGTATTACGC GGACCACAAG GTACGCTCTT CGGTAAAAAC ACAACCGCAG GCGCCTTCAA TATCACGACA AGACAGCCTA GTTTTACCCC GGAAGCTAAT TTCGAGGTAA GCTATGGCAA CTATGGATAT ATCCAGGCAA AAGCAGCCGT TTCAGGTCCG CTCAGTAAGA AATTTGCCGC CCGCGTGTCC TTCTCCGGTA CACAGCGTGA TGGCACACTT TATAATGTGG TGACGCAAAA ACATATCAAT GACCTCAATA ACCTGGGCTT ACGCGGGCAG CTGTTATATA CGCCTTCAGA CAAAGTGAAG ATCACCCTGA CTGCGGACAA TTCCGAGCAA CATCCGGAAG GCTATGCACA GGTGGTAGCA GGTGTAGCTC CCACCTTACG ACCTGCTTAC AGACAGTTTA AACAGATCAT TGCTGACCTG AATTATAAAC TGCCCAGCGA GAATCCATTT GACCGTCTGG TAGACCATAA TACGCCATGG CGCTCCGGTA ATGAACTGGG CGGCGTTGCA CTGAATGTAG ACGCTAAAAT TGGCGGCGGT ACACTGACTT CCACTACCGC GTGGCGTTAC TGGAACTGGG ATCCTTCAAA TGACAGGGAC TTTACCGGTC TGGCAGTATT ACAGTTATCA CAAGCCACTT CCAAACATAA ACAATGGACG CAGGAAGTAC GTTATGCAGG TGACCTGACG TCCCGCCTGA GCGGTGTTAT AGGTGTATTC GGCATCTGGC AGGACCTGAA AACAGATCCT GCGCATATTG AAGAATCAGG AGATGCCCAG TGGCGTTTCT CCCAGAGTTC AACCAGCGAG TTATGGGCGA CACCGGGCTT GTTTGATGGT TATGGTATAA AAACGGTATC CCGTCTGAAG ACTTTCGGCG GTGCTGTATT TGGTCAACTG GACTGGGCGA TCACCGATCA GATACATGTA TTACCAGGTC TGCGTTACAA CTATGACAAG AAAAAAGTAG ACTATGACCG TAAGACATAT GGCGGTTTAC AGACAGACGA TCCGGATCTG ATCGCACTGA AAAATATTGT ATATACCAAT CAGACCTTCA ACGCGGATGT AGATGAAAGC AATGTTTCCG GTCAGCTGAC ACTTGCTTAT AAACCGACAA AAGCCATCAA CGCATTTGCG ACCTATTCCA CCAGTTATAA ACCAATCGGT GTGAATCTCG GCGGCTTACC TACATCAGGC GGTAAAGTAA TGACGGAACT GGCCAGGATC AATCCTGAAT CGGTAAAACA TTTTGAAGTA GGCGTTAAAA CATCTCCGGG CAAGAATGCC ACTGCGAATA TCGTTTACCA CAGAACAGAT ATCAAAGACT ATCAGACGCA GGTACAGACC GCAGAAGTGG GTGTAAACCG TGGTTACCTC GCCAATGCTG AAAAAGTAAG GGTGCAGGGA GTGGAACTGG ATGCAAGTCT GAAGATACAT AGTGCAGTAT CCCTCTATGG TTCCCTTGCC TACACAGATG GCAAATATGT GTCTTTTAAG AACGCGCCGG TACCATTGGA AGAAACAGGT GGCTCTGCTG CCTTTAAAGA TATTTCCGGT GGAGAATTAC CAGGTATTTC AAAATGGGCA GGTTCGATAG GTGGAGAGAT CGTTTCTAAT CCCGGTATCA TCCTGGGACA GAATGCCCGT TTCTTTGTGG GTGCGGATGC ATATTTCCGC TCTTCTTTCT CTTCCAGTCC GTCACCCTCC AAATACCTGA ATATTGACGG TTATACCTTG TTTAATGCCC GTGCAGGTTT CCGTGCACTG AACGGACTGA CTATTTTTGT ATGGGGACGT AATCTGCTGA ATAAAGATTA TTTCGAGCAG TTACTGCCAG CGGCAGGTAA TGCGGGTCAC TATGCGGCCG TATTAGGCGA TCCACGCACT TATGGTGTAA CGATCCGTTA TTCTTATCAC CAGTAA
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Protein sequence | MRKSLLFLMP ILLLAGTAFS QDAVVGVIKN GEGTSVVGAT VVIKGTNVHA IADTSGRFSI PLRRAFPFTL LISSLGYKLE EVKLTSLPTG PLTITLSSDN SLSEVVISSR RRLETAQQVP IPISVISGSL VADAGAFNVN RLKEIVPTVQ LYSSNPRNTT LNIRGVGSTF GLTNDGIDPG VGFYVDGVYY ARPAATTLDF IDIEQVEVLR GPQGTLFGKN TTAGAFNITT RQPSFTPEAN FEVSYGNYGY IQAKAAVSGP LSKKFAARVS FSGTQRDGTL YNVVTQKHIN DLNNLGLRGQ LLYTPSDKVK ITLTADNSEQ HPEGYAQVVA GVAPTLRPAY RQFKQIIADL NYKLPSENPF DRLVDHNTPW RSGNELGGVA LNVDAKIGGG TLTSTTAWRY WNWDPSNDRD FTGLAVLQLS QATSKHKQWT QEVRYAGDLT SRLSGVIGVF GIWQDLKTDP AHIEESGDAQ WRFSQSSTSE LWATPGLFDG YGIKTVSRLK TFGGAVFGQL DWAITDQIHV LPGLRYNYDK KKVDYDRKTY GGLQTDDPDL IALKNIVYTN QTFNADVDES NVSGQLTLAY KPTKAINAFA TYSTSYKPIG VNLGGLPTSG GKVMTELARI NPESVKHFEV GVKTSPGKNA TANIVYHRTD IKDYQTQVQT AEVGVNRGYL ANAEKVRVQG VELDASLKIH SAVSLYGSLA YTDGKYVSFK NAPVPLEETG GSAAFKDISG GELPGISKWA GSIGGEIVSN PGIILGQNAR FFVGADAYFR SSFSSSPSPS KYLNIDGYTL FNARAGFRAL NGLTIFVWGR NLLNKDYFEQ LLPAAGNAGH YAAVLGDPRT YGVTIRYSYH Q
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