Gene Cpin_2246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2246 
Symbol 
ID8358399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2763648 
End bp2764673 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content48% 
IMG OID644964430 
Productglycosyl transferase family 2 
Protein accessionYP_003121938 
Protein GI256421285 
COG category[R] General function prediction only 
COG ID[COG1216] Predicted glycosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0322727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTGTAT TACCATCGGT AGCTGTTGTT ATATTGAATT GGAATGGACG TAGTTTTCTG 
GAAAAGTTTC TGCCATCGGT ATGCAGTTCT ACATACGGGA ACCTGCAACT GTATGTGGCG
GATAATGCTT CTACAGATGA CAGTGTGGCA TTTGTGCGTG AAAAGTTTCC GCAGGTCAGC
ATTATTCAGA ATCCCACCAA CGACGGGTTT GCGGGCGGTT ATAACATGGC CCTGCAGCAT
GTAAAGGCGG ATATATATGT ATTACTGAAT CAGGATGTGG AAGTGGAACC GGGCTGGATT
GAGCCGGTTG TGGCGCAGAT GGTACGCGAT CATCATGTAG CTGCCTGTCA GCCTAAATTA
CGTTTCTATC ACAACAAGCA GGAATTTGAA TATGCCGGAG CGGCAGGAGG ATGGATGGAT
ATCCTGGGAT ATACCTTCTG CAGAGGCAGA ATATTATATA CCACAGAGAT GGACGAGGGA
CAGTATGATG ATGCACAGGA TATTTTCTGG GCAACAGGTG CCGCGCTGTT TATCCGTTCG
GCCTGTTTTC ATGAAGTAGG CGGTTTTGAC GCCAGTTTCT TCGCCCATAT GGAAGAGGTA
GATCTGTGCT GGCGACTCAA AAGAGCCGGT TACCGTATCT GTTACTGTCC GGATTCTATT
GTATATCATG TGGGAGGGGG GAGTCTGCCG CAGGGCAATC CCCGTAAACT GTACCTGAAC
TTCCGGAATA ACCTGATGAT GTTGTGGAAA AACCTGCATC CGGCTGACCG CTGGATCGTA
TTATCCCAAC GTTTTTTCCT GGACCTGCTG GCGGCCGTGA AGAGCCTGGT GGCAGGGAAG
CCTGCTGATA TGAAGGCGAT ATTCAGGGCT TATGTGGATT ATCGTCGTTG GCGGAAGAGT
TATAAATTAT CGTCCGACAG GCTACCACAG AAGCGTTTGC TGGAACTATC AGGGGTCTTT
CATGGTATCA TGATATGGCG TTATTACTTC CTGAACCGTA AGACTTTCGG GACTTTGGAA
AAATAA
 
Protein sequence
MSVLPSVAVV ILNWNGRSFL EKFLPSVCSS TYGNLQLYVA DNASTDDSVA FVREKFPQVS 
IIQNPTNDGF AGGYNMALQH VKADIYVLLN QDVEVEPGWI EPVVAQMVRD HHVAACQPKL
RFYHNKQEFE YAGAAGGWMD ILGYTFCRGR ILYTTEMDEG QYDDAQDIFW ATGAALFIRS
ACFHEVGGFD ASFFAHMEEV DLCWRLKRAG YRICYCPDSI VYHVGGGSLP QGNPRKLYLN
FRNNLMMLWK NLHPADRWIV LSQRFFLDLL AAVKSLVAGK PADMKAIFRA YVDYRRWRKS
YKLSSDRLPQ KRLLELSGVF HGIMIWRYYF LNRKTFGTLE K