Gene Cpin_2206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2206 
Symbol 
ID8358358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2725708 
End bp2726526 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content43% 
IMG OID644964390 
Productsignal transduction histidine kinase 
Protein accessionYP_003121899 
Protein GI256421246 
COG category[T] Signal transduction mechanisms 
COG ID[COG3920] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000133722 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTGCCTGC ATTCCACGTT TGTTGACGCT GGTACCGGAT ATCCGTTATA TGCCATTGCT 
GGTATTGTAT TACTGCTGGT GACTGGTGTT GTGATCTGGC GTCAGGGAAG GAAATATCAT
CAGGCCCTTC AGGAAATAAC ATCTTTACGG TGTAAGCTGA ATGAGTTTGA CCGGTATCTT
GGAAATATTA CCCGTGAAAA AGACTGGCTG ATAGAAGAAA CACATCATCG GGTAAAGAAT
AATCTGCAGA TGGCGATTAG TTTGCTGAAT ACCCAGTATA CCTTCCTGGC AGATAACGAA
GCTCGTCAGG CAGTCCGTAA TACACAACAC AGAATGTTTG CTATTTCGCT GGTATACCAG
AAACTGTATC AGGAAGATGC ATTATCAACA ATTGATATTC CCCAGTATAT CAGCGAACTA
TTGGATTATC TTAAAGATGA ATATGAAGTA GCTGCCGATA TAGACTTCAA TCTTAAAACA
GTACCTTTAA AGCTCGATGT TACACTCGCT ATACCCTTCG GACTCATTAT CACAGAAGCC
ATCAGTAATA TTTTCAGACA TGCTTTTACC GGCAGGGAAG ATGGCAGCGT ATACATCTCC
ATGCAAAGCA ATAACGGCAG GCATTATAAA TTGCTGATAA AGGATAATGG GGTAGGACTG
CCTGTTTCTT TTGATCCTTA TGCGGACACC TCTATGGGAT TGATGCTGAT GACAGGATTA
AGCCGGCAGG TGAGGGGAAC TTTACAGATC TGCAATGATA ACGGCGTTAC CATCGTACTG
GAATTTCTGA ACGATGGCAG GCTGCCGGAG AATTTATAA
 
Protein sequence
MCLHSTFVDA GTGYPLYAIA GIVLLLVTGV VIWRQGRKYH QALQEITSLR CKLNEFDRYL 
GNITREKDWL IEETHHRVKN NLQMAISLLN TQYTFLADNE ARQAVRNTQH RMFAISLVYQ
KLYQEDALST IDIPQYISEL LDYLKDEYEV AADIDFNLKT VPLKLDVTLA IPFGLIITEA
ISNIFRHAFT GREDGSVYIS MQSNNGRHYK LLIKDNGVGL PVSFDPYADT SMGLMLMTGL
SRQVRGTLQI CNDNGVTIVL EFLNDGRLPE NL