| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2189 |
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| Symbol | |
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| ID | 8358341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2692276 |
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| End bp | 2692860 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644964373 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003121882 |
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| Protein GI | 256421229 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00685131 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0000420752 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATACAC AAGATGCCGA GTTAGTTATT AAATTACTTG CCGATGATGT AACAGCCTTT
GATGCCCTGT ACTGGAAATA CCACCAGGCA GTCTACCGAA ATATTTTCAA GTTTGTTAAG
GAGCCCATTG CAACAGAAGA TATTTTGCAG GAGGTCTATG CCAGGTTGTG GGAAAAGAGG
AAAGATATTA ATGCCGGTCA GTCTGTAGCC GGCTGGTTGT TTGTAATCAG TTTTAATCTA
TCAGTAGATT ATCTGAGAAA GAAACTACGC GAGCATACTT TTCATAAGGA GTTATACAAT
CTGAAGATTG ACGCAGGCGA CTGGGAAAAC AATCCCGGTG CTTATGAAGA CCAGTATCAC
CTGCTGGAAG AAGCCATCTC ACAGTTGTCT CCCAAGAAAC AGAGGATTGT CACCCTATGT
AAACTCGAAG GTAAAACATA CGATGAAGTA GCAGAAGAAA TGAAGATTTC CAGGAACACC
GTCAAAGAGC ATTTATCCAT CGCGATGACC CGTATTAATG AATACATTCA GAAGAACAAG
GAGCACAAAT ATGTGTTGTT GCTGCTGTTG TTCCTGAAGA ATTAG
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| Protein sequence | MNTQDAELVI KLLADDVTAF DALYWKYHQA VYRNIFKFVK EPIATEDILQ EVYARLWEKR
KDINAGQSVA GWLFVISFNL SVDYLRKKLR EHTFHKELYN LKIDAGDWEN NPGAYEDQYH
LLEEAISQLS PKKQRIVTLC KLEGKTYDEV AEEMKISRNT VKEHLSIAMT RINEYIQKNK
EHKYVLLLLL FLKN
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