| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2183 |
|---|
| Symbol | |
|---|
| ID | 8358335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2678445 |
|---|
| End bp | 2680781 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964367 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_003121876 |
|---|
| Protein GI | 256421223 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.480779 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0613811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACGAC GTTGTTACGC GATATTATTG TGCACCACTC TGACGGTTCC GGTGATGCTG
TATGGCCAGG AGCAGAAAAG CGTTCGGGTA AGAGCTGATG AAGCTTTTGA AAGACAGGAA
TATGCTGTAG CGGCATCTCT GTATGGAAGG ATCATTAATA AAAAGAAAGA TAAAACTTCC
ATAGATCTGC TGCAACGTAT CGCACTCTGC AACCGGGAAA TCGGTCAGTA TGAGGATGCT
GCTTTCTGGT ATGAGAAAAT GGTCGACCGT CCGGATTGTC CGCCAGTGAC ATATCTGCAA
TACGGAGAAG TCCTGAAGAG TGTGGGTAAA TATGTTGAAG CAAAACAGCA GATCACCAAA
TTCACTACCG GGAAACAGGA TAGTCTCAGA CTGAAGAATG TGATGATGGC GGGTTGTGAT
AGTGCTATCG TCTGGAAATC CGGCCGTCTG GATATGGCGA TGGAAAATAT CAAGGAACTC
AGTTCTTCCG GTTCTGATTA TGTAAGCGGG GTAACAAGAC AGGGTTTGCT GCTGGTATCC
AACGGTTATC GTAAAATGAC CATGAATCTG TTGCCAGAGC GTAACCCGGC GATTGACACA
CGTACGAATC AGCCTTATTA CAAAGCATAT ATTTTCAAAC AATATTCCCA GGGTGTGGCC
AACACTTTCG TAGAAGAAGT AGTGCCGCAA TTATTAGCCC TGGTGCCTTA TCACATCGGC
CCCGTTTGTT TCAACGCAAG AGAGGATACC ATTTACGTTA CACTGAACTC CTGGCAGCAG
GATATTGCCA ACCGTAAAAA ACGCGGTCCG GTAAATGGGG AACGTGTAAT GATGGTGTTC
TGGTCAGTGA AAACAGGCGA CGACTGGAGA CCGCTGGAGC CACTGAGGGA GATCAATGCT
CCTGGTTCCT CTACTGGTCA CGTGGCATTG AGCCGTGATG GTAAAACCAT GTACTTTGCT
TCCAACAGAA AGGGCGGACA GGGTAGAATG GACATCTGGT TCAGCGAAAA ACAAAAGAAC
GGCAGATGGG GTAAACCTAA GAACTGCGGT CCGATCATCA ACACTCCTTT CGACGAAGCA
TTCCCTACCT ATAATGAAGA TAACATGCTT TATTTCTCCA GTAAGGGACA CCCCGGCCTG
GGAGGGTTTG ATATGTTCCG TATAAAAGGT AAAGGCGCTG AATGGACCCG TTTGCAGAAC
CTTCGTTATC CTTTCAACTC CGGTGGCGAT GATCTGGGTT TCATCATGAA AGCGAATATG
TACGAAGGCT ACTTCTCTTC CAACCGTCCA GGTGGTGGTG GTAGCGATGA TATCTACCGC
TTCATGGATA CGCACTTCGC TGAAAGATTT GAGAGAGATC CGGGTATGCA GCCTTATAAA
GAGATCGAAG CGGGTATTAA ACCAGACGTG CCTGCACTCG CTGATAATAC AGCGGTTGTT
ACAGACGTTC CGGCGGAAAC AGTTGCAAAA GCCGATGGCC AGAAACAACC AACCGTCATT
TCTCCAAGAC AACAGGTAGT TGCACCAATT ACTTTACCAA CAGTAGCAGA TCCTGTTCAG
ACCTCGTCTA AAACGACTGA AGAACCGGTT GTGACGAATC CAAGACAGGC GGTAAGTGCA
CCAATCGATA TTCCAGGTGC TGCACCTACT TCACATCCTG CTGAACCGGT AGTAGCTAAA
AACGATCCTG TAGCAGCACC AGTGAAAGAA GAGCCGGCAA AGGAACCTAA ATCAGCTGCG
CCTGTAAGAC GCGGACCAGG TTCAAAAACA CCAGCGCCTG TTAAGAAACC AGGTGTGAAA
ACACCAGCGG TAGCCGTAGC TGCACCAGTA GTAACTGCGC CTGTAACAGA AGAACCGGTA
GTAGAAAAAA CACCTGAAAA AGCACCTGAG AAAACGCCTG CAAAACCAGT TGAAACGGTA
GCAGTCGCAC AACCGGAAGC CAGACAGGAG AAAGAAATGG ACGAAATGGA TGCGGCTATA
CAGCATAAGA TGGAAGGCAT GGAGTTCTAC TACGACTATA ACAGTGCGGT ACTGACCACC
AAGTCAAGAA ACCTGCTGGA TAGGGTAGCG GTAGTACTTA ACCAATATCC TGACTGGAAA
CTCCTGGTTC GTTCCTACAC TGACAGCCGT GGTTCTGACG CATACAACAA GGACCTCTCT
GCACTGCGTT GTTATGCAGT AATTGAATAC CTGGTACGTA AGGGTGTACC TTCTACGAGA
CTTTACTACG AAAACATCGG TAAAGATCCT GAAGATCCAT GCGGTAAAGG TGTACCTTGT
ACGGATGAAC AGTATATGCA CAGCAGACGT ACAATGTTGA AAATCATTCA CAAATAA
|
|---|
| Protein sequence | MLRRCYAILL CTTLTVPVML YGQEQKSVRV RADEAFERQE YAVAASLYGR IINKKKDKTS
IDLLQRIALC NREIGQYEDA AFWYEKMVDR PDCPPVTYLQ YGEVLKSVGK YVEAKQQITK
FTTGKQDSLR LKNVMMAGCD SAIVWKSGRL DMAMENIKEL SSSGSDYVSG VTRQGLLLVS
NGYRKMTMNL LPERNPAIDT RTNQPYYKAY IFKQYSQGVA NTFVEEVVPQ LLALVPYHIG
PVCFNAREDT IYVTLNSWQQ DIANRKKRGP VNGERVMMVF WSVKTGDDWR PLEPLREINA
PGSSTGHVAL SRDGKTMYFA SNRKGGQGRM DIWFSEKQKN GRWGKPKNCG PIINTPFDEA
FPTYNEDNML YFSSKGHPGL GGFDMFRIKG KGAEWTRLQN LRYPFNSGGD DLGFIMKANM
YEGYFSSNRP GGGGSDDIYR FMDTHFAERF ERDPGMQPYK EIEAGIKPDV PALADNTAVV
TDVPAETVAK ADGQKQPTVI SPRQQVVAPI TLPTVADPVQ TSSKTTEEPV VTNPRQAVSA
PIDIPGAAPT SHPAEPVVAK NDPVAAPVKE EPAKEPKSAA PVRRGPGSKT PAPVKKPGVK
TPAVAVAAPV VTAPVTEEPV VEKTPEKAPE KTPAKPVETV AVAQPEARQE KEMDEMDAAI
QHKMEGMEFY YDYNSAVLTT KSRNLLDRVA VVLNQYPDWK LLVRSYTDSR GSDAYNKDLS
ALRCYAVIEY LVRKGVPSTR LYYENIGKDP EDPCGKGVPC TDEQYMHSRR TMLKIIHK
|
|---|
| |