Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2171 |
Symbol | |
ID | 8358323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2658945 |
End bp | 2662403 |
Gene Length | 3459 bp |
Protein Length | 1152 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644964355 |
Product | Exodeoxyribonuclease V |
Protein accession | YP_003121864 |
Protein GI | 256421211 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAC ATATCAACTA CCAGGATTTT AATGCGGCCA CCGTACCTCT GCAGGATAGT AACCTGATAG AGGCCAGTGC CGGTACAGGA AAAACATATT CCATCGCCAT TCTCGTACTG AGACTGGTGC TGGAGAATGG GCTTTCTATT AAAGAAATCC TGATGGTGAC CTTCACCAAA GCAGCCGTAG CTGAACTGGA AGAACGTATC CGTTTATTTG TGCGTACTGC TTATAAGATC AGCCAGGGAC AGGAAACCCG GGATGAAAAC ATCTTCCGGC TGGTAGAAGA AGCCGTAGAA CGTAATGGCC TGGCCGCCGT ACAGCAACAG TTGAGAGATG CGGTATTGTT CCTGGATGAA ACGGCCGTGC TGACTATTCA CAGCTTCTGT CAGAAGACCT TGAATGAGTT CGCCTTTGAA ACAGACCAGT TGTTTGGCGC TGAGATGATC CAGGATACCA AAACCCTGAT AGCAGAAGAA GTACAGAAGT TCTGGCGTAA ATATGTCACC ACCCTGCACA TCCGTTTGCT GGAAAAAGTA TGGGAGCCGG ATATGATGGA GGGGATCAAT GTAGCCCTGA ATGAACATAT GGGCGGGAAG CGTTATTATG CTTATCAACC TGGTAAGAGA TATGCCATCA AACAGAAGGA ACAGGAGGAA TGGTTGCATC AGCTGGATGC AATAGATGAT AAGAAAGCGG CGGTTGAAAA AATCCTGATG GATTATGTGA TCAATGAAAG AGAAACATTG AGGGGATTAT GCGAAGGAAA CAGGTATGCT AAGACGGCAT TATTGCCTTG CATGGATGAT CCTGAATTAT TTATAAAGAC AGTAGCTGAC AAAAGAAACA GCGCCAAATA TATCAGCACA TTGCTGCCTG ACATGCTGGC ACACATGGAC GAGGTAGCCG TTGTGGATGA AGAACGGAAA GGGGTTGTAC AGCAGGTGAT CAGTCGTTTG TATTGCTTTG CCATAGAAGA GATAGCGGCG GGTGTAAAAG GCTTTAAAAA GCGAAACAAC CTGCTGAGTT ACGATGATAT GATCACCAAC CTGCATAAGT CACTGGTGGA CAGAAATAAC CCGAAGCTGG AGGAAGTGCT GCGGGAGAAA TACAAGGCAG TATTTGTGGA TGAATTCCAG GATACTGACA GGATGCAGTA CGAGATCTTT GAAAAAGCTT TCGGAGAAAG CACCATCCTG TTTTATATCG GTGATCCCAA GCAAAGTATC TATGCCTGGC GTAAGGCGGA TATCTTTACC TATTTCAAGG CCAGGGCCAG TGTACAGCAT GTATATGGTA TGAACCGTAA CTTCCGTTCA TCTGAACCTT TTATTGCGGC GATGAACCAG TTCTTCCTGC CCGTACCTGG ATTTGATACC TTCTATTTTG AAGGAGAAGG CAGTGCCATC AACTATATCA AGGTAGATAG TCCGGAGAGC AATACCAAAG GATTACTTTT CAGAGGAGAT GAACCGGATG TGCCGATCTC CGTTTTTAAC ACATCTAATA GCACAGAACT TTCTGAGAGT GTGGCCGCAC AGGTCGCAGC TTTACTGAGA AGCGGGGAAT ATTTTATCGG TGATGAAGAT GAACGTCGTC CTGTAAAACC ATCTGATATC GGTATCCTCG TGCGTACCGG CCGGCAGGGC AGGGAAGTAA AGGCACAGCT GGCGAGACTG GGTATACCTG CCGTGACGGT AGATGATGCA AAGGTATTAC AATCAGAAGA GGCGACTTAC CTGTTATACC TGATGGAGGC GATGCTGGCG CCTGACAGGT CTTCCATCAA CCGTGCCCTG TTATCGCCTT TTACGGGTCT GAAACTGGAA TCCGTACTGA CACTGGATGA TGAAGTAACG CTGGGCTTAT TCGGCAACTA TAAAAACAGG TGGCAGCAGG ATGGTATCTA TACCGCAATG ATGGATTTTG TAACCGACTT CAATGTGCGT AACGTATTGC TCCATGCACA TACAGAAAGT GGGGAACGTA TCATTTCCAA TCTCTTTCAG CTGACGGAAC TGGTACACCA GATCCAGAGC CGTAAGAACC TGTCTATGAC AGAACTGGTA TCCTGGCTCA AACGTGGTAT AGACGGAATG GCCACAGAAG GTGACGAGTA TGAGCAGCGT ATGGAAAGTG ATGAAGAAGC GGTGAATATC GTGACCATTC ACAAGAGTAA AGGACTGGAA TACAAAATCG TGATGGCGCC TTATCTCGAC TTTGTAGAAA ACAAGTATAT AGCGTTTTTT AGTTTCCGTG ACCCGCTGAC TGGTGATTAT GTAGGTGTGG AAAAGAAGCG TATGACAGAT GAACAGCAGG CTTCTTATGC ACGTCAGGCA GAGCAGGAGA ACAGACGTTT GTTATACGTA GCTATCACCC GTGGTGTGTA TAAATGTTTT GTATTCCGGA ATAACTATCA TAAAAAATCT ACCCTGCTTA CTTTCCTGGA AGCATTAGTG GCAGCAGCGC CTTCTCCTGA CATTATCCGT TTTGAAGAAG GAATGCCGGT AGCGCCTGAA CAGCAGGCCG GCAATAAGGT CTTACCACTC GCTCCGGTTG ATCCGGATAT GCCTGTCAGG TTTGTGCTGA AAGAACAGAA CTGGCGGAAG ATGAGTTATA CCATGCTGGC GGCAAAGGCG GAGCATAATC TGCGGACAAG GGCTTCTCAA AAGGAAGATC CTTACGAAAC CTTTATTTTC CACACATTGA AACGTGGCGC GAAGACGGGG AATCTGCTGC ACTTCCTGTT TGAGAATATC AATTTCTCTG AGGATAGTCG CTGGGAAAAA TGGATCACAG AAACAGTACG CCGTTTTGTA CCCGGGCAGC AGGACTTATA TGGCCCGATG TTGAGACAGT TACTGGAGCA TGTGTTACAG ACAGATATTA CGGTAGATGG ACGCACATTC CCATTGGCGG CTATCATCTG GCATAAACGT ATCCCTGAGT TTGAGTTTGA CTTCCCGGTA TCCGCGTTTT TCCCGGATAT GCTGAACGGT CTTTCTGATG ACAGAACGAG TGTAGTCGTA CGTCGTTTCC ATGAACAGGG CAGCAGTGAA CTGGAAGGTA TCATGAATGG GAAAATGGAC CTGTTCTTTG AGCACGAAGG CAGGTATTAT ATCCTTGACT GGAAATCCAA CTATCTGGGA GGAACGCCGG AAGATTATAC ACCGACCGCT GTATCCGCAG CGATGAACGA AAACAACTAT CACCTGCAAT ACCTGATTTA TACGCTGGCA GCTAAGAAAT ACCTGGAGAG CCGCTTACAT GCATTTGACT ATGAAACGCA ATTCGGCGGG GTGATCTACT GTTTTGTCAG GGGCATAAGA AAAGGGCAGT CTACCGGTAT ATTTACCACT AAACCACCCT TATCTAAAAT ATTACAGCTG GAAAGTAGTT TGTCTCCCAA TGTAAACAGG AAACAACCTC CTCAGCAAAA ACTATTCGAC ATCTACTAA
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Protein sequence | MNEHINYQDF NAATVPLQDS NLIEASAGTG KTYSIAILVL RLVLENGLSI KEILMVTFTK AAVAELEERI RLFVRTAYKI SQGQETRDEN IFRLVEEAVE RNGLAAVQQQ LRDAVLFLDE TAVLTIHSFC QKTLNEFAFE TDQLFGAEMI QDTKTLIAEE VQKFWRKYVT TLHIRLLEKV WEPDMMEGIN VALNEHMGGK RYYAYQPGKR YAIKQKEQEE WLHQLDAIDD KKAAVEKILM DYVINERETL RGLCEGNRYA KTALLPCMDD PELFIKTVAD KRNSAKYIST LLPDMLAHMD EVAVVDEERK GVVQQVISRL YCFAIEEIAA GVKGFKKRNN LLSYDDMITN LHKSLVDRNN PKLEEVLREK YKAVFVDEFQ DTDRMQYEIF EKAFGESTIL FYIGDPKQSI YAWRKADIFT YFKARASVQH VYGMNRNFRS SEPFIAAMNQ FFLPVPGFDT FYFEGEGSAI NYIKVDSPES NTKGLLFRGD EPDVPISVFN TSNSTELSES VAAQVAALLR SGEYFIGDED ERRPVKPSDI GILVRTGRQG REVKAQLARL GIPAVTVDDA KVLQSEEATY LLYLMEAMLA PDRSSINRAL LSPFTGLKLE SVLTLDDEVT LGLFGNYKNR WQQDGIYTAM MDFVTDFNVR NVLLHAHTES GERIISNLFQ LTELVHQIQS RKNLSMTELV SWLKRGIDGM ATEGDEYEQR MESDEEAVNI VTIHKSKGLE YKIVMAPYLD FVENKYIAFF SFRDPLTGDY VGVEKKRMTD EQQASYARQA EQENRRLLYV AITRGVYKCF VFRNNYHKKS TLLTFLEALV AAAPSPDIIR FEEGMPVAPE QQAGNKVLPL APVDPDMPVR FVLKEQNWRK MSYTMLAAKA EHNLRTRASQ KEDPYETFIF HTLKRGAKTG NLLHFLFENI NFSEDSRWEK WITETVRRFV PGQQDLYGPM LRQLLEHVLQ TDITVDGRTF PLAAIIWHKR IPEFEFDFPV SAFFPDMLNG LSDDRTSVVV RRFHEQGSSE LEGIMNGKMD LFFEHEGRYY ILDWKSNYLG GTPEDYTPTA VSAAMNENNY HLQYLIYTLA AKKYLESRLH AFDYETQFGG VIYCFVRGIR KGQSTGIFTT KPPLSKILQL ESSLSPNVNR KQPPQQKLFD IY
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