Gene Cpin_2170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2170 
Symbol 
ID8358322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2655737 
End bp2658928 
Gene Length3192 bp 
Protein Length1063 aa 
Translation table11 
GC content46% 
IMG OID644964354 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_003121863 
Protein GI256421210 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.411228 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTAT ATCTGAGAGT GTCTAATTCC CTGGAGAACC TCTCCATGGG ATTGGCACAG 
ACACTGAAAG CTTCCAACAG CCAGGTGTTT GAACAACACC TGATCGTCAC ACAGACGGAA
GGGATGAACA ACTGGTTGAA ATTACAGCTG GCAGAATACC TGGGTATTGC TGCCAATTGC
CGTTTTCTCA AACCGAATGA TCTGATCCAT CAGATCTATT TCCTGATGGA TGGTCAGTAT
TCGGAAATGC TTTCCGGCAG AAATCTTACC TGGCTGTTGT ACAAATTGCT GGGAGAAGAT
ATCTTCCGTG AAACCTATCC TGCCGTCGCT ACTTATTACC ATACAACAGA ACCGGATAGC
GATCTGAAAA GAATGGCCCT GGCAGAAAGG ACAGCTGACC TTTTTGACCA GTACCAGATC
TATCGTCCGG AGATGATCAA TGAATGGAAT GCGCCACCGG AAGACCCGTT TGCAAAGATT
GACTGGCAAC AATATCTGTG GACAGAAGCC AAGAAAGTAT CTGGTCATGC GCTGCCTGAT
AAAACCATTA TCGGACAGCA CATCCTGGAT ATGCTGAAGA ATCCTGATCA CCAGGAGACG
CTGGCACACC GGATGAATAC CGTACATCTG TTCGGTCTCT CCATCATCAC AGCTTATCAC
GTGCAGATCC TGCATGAACT GTCTTCCTTC ATTGATATCT ATTTCCATAT CATCAACCCC
TCTCCGGAAC TTTACTGGTT TGATGATAAG AGTGAGAAAC AACAGGCACG CTGGCGATTG
AAAGGTCGTC CTATCCACGA ATCGGATACA GCCGGTAATC CGTTGTTGAT GGGATGGGGT
AGGGTCGTAC AGGATACTTT CGGCCTGTTC TTCAAATATG ATGCTTTTAT CAACGCCTAC
GAAAGCGAAG GACTGGTAGA GCCACAACCG GATACCTTGC TCAACAAAGT ACAGCACGAT
ATCTTTCTTA ATGCCAATGA GCAACGGCAT CCGATCTTCC CGGAAGATGT GGAAGATGGA
TCTATCACGA TCAACAACTG TTACACGGTT GCCCGTGAGG TAGAAGTCCT GTACAACTAT
CTGGTACATC TCGTAGATAA AAAAAGAGAA ACCTTATCTC CCCGTGATAT CGTTGTCATG
GTGAGAGATA TTGACGTATA TGCGCCTTAT ATCAAGGCGA TCTTCAACAA TGCCCCTTAC
AAGTTCCGGT ATACGATCGC GGATGAAAGC TATGCGGACA GCGATAACCT GTTCAATGCC
CTGCACGCCA TCCTGCGATT GAATGAAGAC AATTTTAAGG CGGAGGAAGT GCTGCAGTTA
CTGGATTCTT CCTATGTCCG CAAACGTTTT GGTATCAACA ACGTACCATT GATCCGGCAT
GTTGTTGACG AAGCAAATAT CCGCTTTGGT ATTCACGGGG CTAAAGAAGA TGAAACCTAT
CTTGTCAGCT GGAAATATGG TATCAAACGT ATCATGTATG GTATCTGTAT GAGCGGCGAT
CAGGAATATG GTAAAGGAGA GGAAGGGTTC TTCCCGCTGG ATATACTGGA AGGGAGTGAT
AGTCTGGAAG TGATCCGATT CTGTCATTTT GCCGAAGTAC TGATCTCTGC CATAGAAGAT
CGTAAGAAAG AACGTAGTAT CAGTGGCTGG GTAGAGTATA TCGAGGGAAT ATTGCACAAT
ATGGTCTATG AACCGGAAGA GGAAATAGAC GAAGACTATA ATACACTCAT GCAGCAGTTG
TCGGATTACA ACCTGCTGAA TGAATATATG AGCGATACAG TGGCTTTTGA CGTGTTCAGT
CATAGCTTCC TGCAAACACT GACGGGTACT ACCCGTACAG GTTTGTTTGT AAACGGAGGG
ATCACTTTCT GTTCCCTGAT CCCGATGCGT AGTATTCCCT TCAGGGTAGT GGCGATGCTG
GGACTGGACT ATGATAAGTT TCCCCGCCGG GAACAGCCGA TCGGCTTTAA CCTGATGGAG
AAAAACAAAC AGCGGGGCGA TCGTAATGTA AAGGATAACG ATAAACACCT GTTCCTGGAA
ACGGTGCTTT CTGCACGGCA ATACCTGTAT ATCAGTTACG TCGGACAAAG CGCCAAGGAT
AACAGTCGTA TGCCGCCTTC TGCATTAGTG GATGAACTGC TGGATTATAT AGAATCCGGT
TGTGAGGATG CCGAGGGAGT CAGGAACCGC CTTGTTACCA GACAGCCTTT ACAGGGCTTT
AGCAGAAAAT ACGGACAGGG TGATGAACGG CTGTACAGTT ATCTGAATAC CGCTGTGCCG
GAGCGTATCA TTACCCGTGC TGATAAGGCG ATGGAACAAC CATCCATTGA GGAAATTGAC
CTGGATGAAC TGGTCCGTTT CTTTAAGAAT CCTTTTAAAG CTTACTATAA CAAAGTACTG
GGGATCTATT ATAACGACGA ACAGGTGCTG TTGAATGAAA CAGAGATCTT CCACCTGGAT
AGTTTGCAGA AATGGAGCCT GAAGAATGAA TTGTTGCAGA TGGATACCAA TGCCATTGCC
AACATGAAGA TCCGCCTGGT GAAGACGGGA CGGCTGCCAC TGAAGAATAT GGCTTATGTG
GCTTTGCAGC AGATAGAAGC AGAGGTACAG CCGGTACGCG AGAAATTCCG TGCCTGTATC
AATGGGGCGG AAGAACAATC CGTACAGGTG AATCTGGATA TAGAAGGCAC CTTGCTGAAA
GGAACTATTA ACGGTGTATT CGATGGTAAG CTGGTACAGG TATCCTGGTC TAAAAGAGAG
GACAAATACC TGATGGAGGC TTATATCCGG TACCTTGCCG GACGGGCGGC CGGTGTGCTG
GACGGAATGT GCTTTATCTC GGGAGCCAGC AAAAGAGAAG CCTTTGAGGC GATTCCCCTG
GCACAACAGG AAGCATTACG AAGACTGACG GCATTAGTAA AGATTTTCAG AGAAGGCTTT
GAGAAGATTA CGCCGTTTTA TCCTGACTTT GACATCAAAC CGGCAGATGT GGCCGGACTG
GATTTCAGTA AATTCAGTAA AAAGGTGGAT AAGGCCCTGG ATAAAGGGGA TGACATCACC
ATTGATCCAT ATATCTCCCG GGAGTATGAA AATGGTTTCT TTAAAGATGA AACGATGCTG
GATACTTATA AAGTGATTTG CAGTCATCTG CTGGTACCGC TGGCGGAAAT AATTCCAGGT
TATTACAATT AA
 
Protein sequence
MALYLRVSNS LENLSMGLAQ TLKASNSQVF EQHLIVTQTE GMNNWLKLQL AEYLGIAANC 
RFLKPNDLIH QIYFLMDGQY SEMLSGRNLT WLLYKLLGED IFRETYPAVA TYYHTTEPDS
DLKRMALAER TADLFDQYQI YRPEMINEWN APPEDPFAKI DWQQYLWTEA KKVSGHALPD
KTIIGQHILD MLKNPDHQET LAHRMNTVHL FGLSIITAYH VQILHELSSF IDIYFHIINP
SPELYWFDDK SEKQQARWRL KGRPIHESDT AGNPLLMGWG RVVQDTFGLF FKYDAFINAY
ESEGLVEPQP DTLLNKVQHD IFLNANEQRH PIFPEDVEDG SITINNCYTV AREVEVLYNY
LVHLVDKKRE TLSPRDIVVM VRDIDVYAPY IKAIFNNAPY KFRYTIADES YADSDNLFNA
LHAILRLNED NFKAEEVLQL LDSSYVRKRF GINNVPLIRH VVDEANIRFG IHGAKEDETY
LVSWKYGIKR IMYGICMSGD QEYGKGEEGF FPLDILEGSD SLEVIRFCHF AEVLISAIED
RKKERSISGW VEYIEGILHN MVYEPEEEID EDYNTLMQQL SDYNLLNEYM SDTVAFDVFS
HSFLQTLTGT TRTGLFVNGG ITFCSLIPMR SIPFRVVAML GLDYDKFPRR EQPIGFNLME
KNKQRGDRNV KDNDKHLFLE TVLSARQYLY ISYVGQSAKD NSRMPPSALV DELLDYIESG
CEDAEGVRNR LVTRQPLQGF SRKYGQGDER LYSYLNTAVP ERIITRADKA MEQPSIEEID
LDELVRFFKN PFKAYYNKVL GIYYNDEQVL LNETEIFHLD SLQKWSLKNE LLQMDTNAIA
NMKIRLVKTG RLPLKNMAYV ALQQIEAEVQ PVREKFRACI NGAEEQSVQV NLDIEGTLLK
GTINGVFDGK LVQVSWSKRE DKYLMEAYIR YLAGRAAGVL DGMCFISGAS KREAFEAIPL
AQQEALRRLT ALVKIFREGF EKITPFYPDF DIKPADVAGL DFSKFSKKVD KALDKGDDIT
IDPYISREYE NGFFKDETML DTYKVICSHL LVPLAEIIPG YYN