Gene Cpin_2074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2074 
Symbol 
ID8358226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2527164 
End bp2529965 
Gene Length2802 bp 
Protein Length933 aa 
Translation table11 
GC content44% 
IMG OID644964259 
Productbifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 
Protein accessionYP_003121768 
Protein GI256421115 
COG category[C] Energy production and conversion 
COG ID[COG1049] Aconitase B 
TIGRFAM ID[TIGR00117] aconitate hydratase 2 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGTT ATAATGAATA TCTTAAGGAA ATAGAAGAAA GAAAAGGTCA GGAACTGCAT 
CCAAAGCCGA TTGATGGTGC CGAATTGTTA AATGAAATCA TCGAACAAAT TAGAGATCTG
GCAAATGTGC ACCGGAAAGA TTCTCTTAAT TTCTTCATTT ATAATGTGTT ACCAGGAACC
ACGAGTGCAG CTGGTGTAAA AGCTAAGTTT TTAAAGGAGA TCATCCTTGG AACAGCTAAA
GTAGAAGAAA TTACACCTGC TTTTGCTTTT GAGTTGTTAT CCCACATGAA AGGAGGTCCT
TCCATTGAAG TGCTGCTGGA TCTGGCCCTG GGTAATGACG CGGCGATTGC AAAAGAAGCT
GCTAAGGTGC TCAAAACACA GGTTTTCCTG TACGATGCGG ACACAGACCG CCTGAAAGAG
GCATTCAAAA ATGAAAATCC GATAGCGAGA GAGATCATTG AAAGTTACGC TCAGGCTGAG
TTTTTCACAA AACTGCCTGA AGTACCTGAA GAAATTAAGG TAGTGACTTT CATCGCTGGT
GAAGGTGATA TTTCGACTGA CTTGCTCTCT CCTGGCAACC AGGCGCATTC CAGATCTGAC
CGCGAACTGC ATGGTAAATG CATGATCACC CCTGCAGCAC AGGCTGAAAT CAAGAAATTA
CAGGCAGAAC ACCCTGACAA GAGTGTGATG CTGATTGCTG ATAAAGGTAC CATGGGTGTA
GGTTCATCAA GGATGTCCGG CGTAAACAAC GTGGCACTCT GGACAGGCAA ACAGGCAAGT
CCTTATGTTC CATTTGTTAA CATTGCCCCT ATTGTAGGTG GTACTAATGG TATCTCCCCT
ATCTTCCTCA CGACTGTTGA TGTTACCGGT GGTATCGGTA TTGACCTCAA AAACTGGGTA
AAAAAGGTAG ACGAAAATGG TAAACTGATT CGTAATGAAG CTGGTGAACA TATTCTCGAA
GAAGTATACT CTGTGGCTAC CGGCACCGTA CTGACAATCA ACACAAAGAA GAAGAAACTT
TATAACGGCG ATAAAGAACT GATTGACATT TCCAAGGCAC TGACGCCGCA GAAAATGGAA
TTTATCAGGG CTGGCGGATC ATATGCGATC GTATTTGGTA AAAAGATCCA GACTATCGCC
GCAAAACTCC TGAACATCGA AATTCCCCCT GTATTCGCTC AGCCAAAAGA AATTTCTCAC
GAAGGTCAGG GTCTGACAGC AGTAGAGAAA ATTTTTAACA GAAATGCCGT TGGCACAACT
CCAGGTAAAG TATTACATGC TGGTTCAGAT GTTCGCGTAG AAGTGAACAT CGTAGGTTCT
CAGGATACGA CTGGTCTGAT GACTGCTCAG GAACTGGAAT CTATGGCAGC AACCGTGATT
TCGCCAATTG TGGATGGCGC CTACCAGTCA GGCTGTCACA CCGCTTCCGT ATGGGATAAA
AAGGCACAGG CAAACATTCC AAAACTCATG AAATTCATGA ACGAATTTGG TCTGATCACT
GCCCGTGACC CGAAAGGCGA ATATCACTCC ATGACAGACG TTATTCACAA AGTACTGAAC
GATATTACGG TAGACGAGTG GGCAATCATC ATCGGTGGTG ACTCCCACAC AAGAATGTCC
AAAGGTGTTG CCTTTGGTGC TGACTCAGGT ACCGTTGCCC TCGCACTGGC TACAGGTGAA
GCATCCATGC CTATTCCGGA ATCAGTGAAA GTAACCTTCA AAGGAGAAAT GAAGGATCAC
ATGGATTTCC GTGATGTGGT ACATGCTACA CAGGCACAGA TGCTGCAGAA ATTTGCAGGA
GAGAACGTTT TCCAGGGCAG AGTCATTGAA GTGCATATCG GAACACTCCC TGCTGACCAG
GCATTCACCT TCACCGACTG GACTGCAGAA ATGAAAGCAA AAGCTTCCAT CTGTATTTCT
GAAGATGATA CCCTGATCCA ATCACTGGAA ATTGCTAAAG GCAGAATCCA GATCATGATT
GATAAGGGTA TGGACAACAG CAGACAAGTA CTGCAGGGCC TGATCAACAG AGCTGATAAG
AGAATCGCAG AAATTAAATC AGGTGAGAAA CCAGCTTTAA CGCCCGACGA GAACGCAAAA
TATTATGCAG AAGTTGTAAT TGACCTGGAT GCTATCGTTG AACCAATGAT CGCGGATCCG
GATGTTAATA ACGATGATGT TGCAAAACGA TATACCCATG ATACCATTCG TGCGCTCTCA
TACTACAGCG GCGAGAAAAA AGTAGATCTT GGTTTCGTTG GATCTTGCAT GGTACACAAA
GGTGACCTGA AAATTGTTTC TCAGATGCTC AGAAATCTGG AAAATCAGAA TGGCAAAGTT
GAGTTCAATG CACCACTTGT AGTGGCAGCA CCAACCTACA ATATCATTGA TGAACTGCAG
GTAGAAGGAG ATTGGGAAAT ACTTCAGAAA TATTCTGGTT TTGAATTCAA CGACAATGCT
CCAAAAGGCG CTGCTCGTAC CGAATACGAA AACATGATGT ATCTTGAGCG TCCAGGTTGT
AACCTTTGTA TGGGTAACCA GGAGAAAGCA GCTAAAGGTG ATACCGTAAT GGCTACCTCT
ACGCGTCTTT TCCAGGGAAG AGTCGTTGAA GATTCTGATC GCAAAAAAGG TGAATCCCTG
CTTGCATCTA CACCAGTAGT TGTTCTTTCT GCCATCCTTG GAAGAATTCC TAATATGGAA
GAATATAAAG CAGCAGTAGT AGGTATCGAT CTGACGAAGT TCGCGCCTCC GCTGAAAAAC
ATGACTACAA CCGCAACACG TACAGACAGT CTGTCTTACT AA
 
Protein sequence
MSRYNEYLKE IEERKGQELH PKPIDGAELL NEIIEQIRDL ANVHRKDSLN FFIYNVLPGT 
TSAAGVKAKF LKEIILGTAK VEEITPAFAF ELLSHMKGGP SIEVLLDLAL GNDAAIAKEA
AKVLKTQVFL YDADTDRLKE AFKNENPIAR EIIESYAQAE FFTKLPEVPE EIKVVTFIAG
EGDISTDLLS PGNQAHSRSD RELHGKCMIT PAAQAEIKKL QAEHPDKSVM LIADKGTMGV
GSSRMSGVNN VALWTGKQAS PYVPFVNIAP IVGGTNGISP IFLTTVDVTG GIGIDLKNWV
KKVDENGKLI RNEAGEHILE EVYSVATGTV LTINTKKKKL YNGDKELIDI SKALTPQKME
FIRAGGSYAI VFGKKIQTIA AKLLNIEIPP VFAQPKEISH EGQGLTAVEK IFNRNAVGTT
PGKVLHAGSD VRVEVNIVGS QDTTGLMTAQ ELESMAATVI SPIVDGAYQS GCHTASVWDK
KAQANIPKLM KFMNEFGLIT ARDPKGEYHS MTDVIHKVLN DITVDEWAII IGGDSHTRMS
KGVAFGADSG TVALALATGE ASMPIPESVK VTFKGEMKDH MDFRDVVHAT QAQMLQKFAG
ENVFQGRVIE VHIGTLPADQ AFTFTDWTAE MKAKASICIS EDDTLIQSLE IAKGRIQIMI
DKGMDNSRQV LQGLINRADK RIAEIKSGEK PALTPDENAK YYAEVVIDLD AIVEPMIADP
DVNNDDVAKR YTHDTIRALS YYSGEKKVDL GFVGSCMVHK GDLKIVSQML RNLENQNGKV
EFNAPLVVAA PTYNIIDELQ VEGDWEILQK YSGFEFNDNA PKGAARTEYE NMMYLERPGC
NLCMGNQEKA AKGDTVMATS TRLFQGRVVE DSDRKKGESL LASTPVVVLS AILGRIPNME
EYKAAVVGID LTKFAPPLKN MTTTATRTDS LSY