| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2050 |
|---|
| Symbol | |
|---|
| ID | 8358201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2498837 |
|---|
| End bp | 2500171 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964237 |
|---|
| Product | peptidase M50 |
|---|
| Protein accession | YP_003121746 |
|---|
| Protein GI | 256421093 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0906941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC AAGAAATATT GGTAAAGGCC GGGCAGTTGA TACTGTCACT ATCCATACTG
GTCGTTTTAC ACGAGCTTGG GCACTTTATC CCCGCCAAGC TTTTTAAAGC AAGGGTTGAA
AAGTTTTATT TGTTCTTTGA CCCCTGGTTT TCCTTGTTTA AAAAGAAAAA AGGAGATACA
GAATATGGTA TTGGCTGGTT GCCACTGGGC GGATATGTAA AAATATCCGG TATGGTGGAT
GAGAGCATGG ACCGTGAGCA GATGGCAAAA CCGCCACAGC CATGGGAATT CCGCTCAAAA
CCAGCCTGGC AGCGTCTGAT CATCATGATT GGCGGTGTTA CCGTTAACCT GATACTTGGT
TTCCTGATCT ACGCGATGAT GTTGTGGCAT TGGGGCGAAA GCTATCTGCC GACCAAAAAC
CTGACTTATG GTATTGCGGT TGACTCCCTG GCTGGTAGTA TTGGTTTGAA AGACGGAGAC
ATGGTATTAT CTGTGAATAA GGAACCAGTT GAAAATTTCC GTTCTATTCC GGCAGAGATC
ATTCTTCGCG AAGCAACCAG CATCCAGGTA GAGCGTGATG GCAAGCCTGT TGACATCAAG
ATCCCCACTG GTTTTATCCG TGAAATGATC AAAAGAAAAG GCACTTTGAT GGATGTGCGC
ATTCCGTTTG AAGTGGATAC CGTATTGCCG AAATCAGCAG CAGAGAAAGC CGGTTTCAGA
AAAGGCGACA GAACTTTGTC TGTAAACGGA GCGCCTGCGA GCTATTTCCA TGAGTTCAGA
AAGGTATTAC AGAGCTACAA GAATAAAACT GTTCCTATCC AGGTTTTACG TGACGGCGAT
ACTATTCAGT TATTCGCACA CGTTACCGAA AATGGTACAG TTGGTATGGC GCCTGCTAAT
CCGGAAAAGG ATTTCAAATT CGCTACCAGA GAATATACTT TATTACAGGC GATTCCTGCA
GGTTTCTCTA AGTGTATCAA TACACTGGTG AAATATGTAC AGCAGCTGCG TCTGATCTTC
GTTTCCAAAG AAGTAAAAGC CAATGAATCC CTGGGTGGTT TCATCAGCAT CGGTAACCTG
TTCCCTGCTC ATTGGGACTG GATTGCTTTC TGGGAAATGA CGGCGTTGTT GTCAATCATC
CTGGCATTTA TGAATATCCT ACCGATTCCG GCGCTGGATG GTGGTCATGT ACTGTTCCTC
TTATACGAGA TCATTACCGG CCGTAAACCA AGCGAGAAAT TCCTGGAATA TGCACAGATT
GTTGGGATGA TCATCCTGTT TGGTCTGTTG TTATATGCGA ATGGACTGGA TATCTGGCGA
AGTATTTTTA AATAG
|
|---|
| Protein sequence | MTTQEILVKA GQLILSLSIL VVLHELGHFI PAKLFKARVE KFYLFFDPWF SLFKKKKGDT
EYGIGWLPLG GYVKISGMVD ESMDREQMAK PPQPWEFRSK PAWQRLIIMI GGVTVNLILG
FLIYAMMLWH WGESYLPTKN LTYGIAVDSL AGSIGLKDGD MVLSVNKEPV ENFRSIPAEI
ILREATSIQV ERDGKPVDIK IPTGFIREMI KRKGTLMDVR IPFEVDTVLP KSAAEKAGFR
KGDRTLSVNG APASYFHEFR KVLQSYKNKT VPIQVLRDGD TIQLFAHVTE NGTVGMAPAN
PEKDFKFATR EYTLLQAIPA GFSKCINTLV KYVQQLRLIF VSKEVKANES LGGFISIGNL
FPAHWDWIAF WEMTALLSII LAFMNILPIP ALDGGHVLFL LYEIITGRKP SEKFLEYAQI
VGMIILFGLL LYANGLDIWR SIFK
|
|---|
| |