Gene Cpin_2028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_2028 
Symbol 
ID8358179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2470210 
End bp2470926 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content49% 
IMG OID644964215 
Productdihydrodipicolinate reductase 
Protein accessionYP_003121724 
Protein GI256421071 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0289] Dihydrodipicolinate reductase 
TIGRFAM ID[TIGR00036] dihydrodipicolinate reductase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.279033 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CGCTTATCGG TTACGGAAAA ATGGGAAAGG CAATTGAGGC AATCGCCGTT 
GCCAAAGGAC ACGAAATTGT TCATCGTATT GACCTGAGTA ATCTGCACCT GCTTGAGAAA
GAAGAACTCA GCAAGGCTGA TGTGGCCATC GAATTCACCG GTCCGGAAAC TGCCTATAGC
AATATCCTGA AATGTTTTGC CGCCAATGTA CCTGTCGTTT GCGGCAGCAC AGGCTGGCTG
GAACATCTCG GCACAGTGAA ATCCGCCTGT CTGGAACAAC ACCAGGCATT CCTCTACGCC
AGCAATTTCA GCGTAGGTGT GAATATCTTC TTCGAAATCA ATAAACGCCT CGCAGAACTG
ATGGCTAACC AGCCCCAGTA CGGTGTGAAA ATGGAAGAAA TCCACCACAC ACAGAAAAGA
GATGCACCAA GCGGTACCGC TATCACCCTG GCAGAACAGG TAATGGATAA GGTACAGCGT
AAAAAAGAAT GGGTAAATAC CGAAGAGGCA CAGCCTGAAC AACTGTCTAT CGTCTCCAAA
CGTATTGACC CGGCTCCTGG TACACACAGC ATCACCTATA CGTCCAGCAT AGACGACATC
AGCATCACAC ATACAGCTCA TTCCCGCGAG GGTTTTGCTT CAGGTGCCGT CGTGGCTGCA
GAATGGATAC TGGGAAAACA TGGTGTATTC GGTATGAAAG ACGTACTGAG CCTGTAA
 
Protein sequence
MKIALIGYGK MGKAIEAIAV AKGHEIVHRI DLSNLHLLEK EELSKADVAI EFTGPETAYS 
NILKCFAANV PVVCGSTGWL EHLGTVKSAC LEQHQAFLYA SNFSVGVNIF FEINKRLAEL
MANQPQYGVK MEEIHHTQKR DAPSGTAITL AEQVMDKVQR KKEWVNTEEA QPEQLSIVSK
RIDPAPGTHS ITYTSSIDDI SITHTAHSRE GFASGAVVAA EWILGKHGVF GMKDVLSL