Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2020 |
Symbol | |
ID | 8358171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 2462232 |
End bp | 2463056 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644964207 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_003121716 |
Protein GI | 256421063 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00991781 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTCAGCAA CAACACATCT GAAATCCCTT TTTAAGGATC AATACAATCC TGACAACTTT TTTCTGATAG CCGGTCCTTG TGTAGTAGAG GATGAAGCGC TGCTGATGCA TGTAGCTGAA AAAGTTTCAG GAATCTGCAA AAGACTGAAT ATCCCATATA TCTTCAAAGC GTCTTATCGT AAAGCGAACC GTACCAGTAT CAACTCCTTT GCCGGTGTTG GTGATGTGGA AGGACTGGAC CTCTTACAAA AGACTAAAGA AACATTCGAT CTGCCTGTTA CAACAGATAT TCACTCCGCT GCGGAAGCTG CTATGGCTGC TGCGTATGTG GATATCCTGC AGATCCCGGC GTTCCTTTGC CGTCAGACTG ATATCCTGAT CGCAGCTGCG GAAACCGGTA AAGTGGTGAA TGTAAAGAAA GGCCAGTTTG TAAGCGGCGA AGCCATGAAA TTTGCGGTTG AAAAAGTAAA ACAGGCAGGT AATGATAAAG TTTGGCTGAC CGAGCGCGGT ACCACCTTCG GTTACCAGGA CCTCGTGGTA GACTACCGCA ATATTCCGAT TATGCGTGAA CATGGCGTAC CTGTTATCAT GGATTGTACA CACTCCCTGC AACAGCCTAA CCAGACCAGC GGCGTTACCG GCGGTAACCC GAAACTGATC GGCACTATCG CCAAAGCAGC TATTGCTACC GGCGCAGATG GTCTGTTCAT CGAAACACAT CCTGATCCAT CCAAAGCGAA GTCCGACGGC GCTAACATGC TGCACCTGGA TCTGCTGGAA GGATTACTGG AAGACCTGGT AAGAATCCGT GAAGTAATAA GATAA
|
Protein sequence | MSATTHLKSL FKDQYNPDNF FLIAGPCVVE DEALLMHVAE KVSGICKRLN IPYIFKASYR KANRTSINSF AGVGDVEGLD LLQKTKETFD LPVTTDIHSA AEAAMAAAYV DILQIPAFLC RQTDILIAAA ETGKVVNVKK GQFVSGEAMK FAVEKVKQAG NDKVWLTERG TTFGYQDLVV DYRNIPIMRE HGVPVIMDCT HSLQQPNQTS GVTGGNPKLI GTIAKAAIAT GADGLFIETH PDPSKAKSDG ANMLHLDLLE GLLEDLVRIR EVIR
|
| |