| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2003 |
|---|
| Symbol | |
|---|
| ID | 8358154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 2442905 |
|---|
| End bp | 2443774 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964190 |
|---|
| Product | protein of unknown function UPF0187 |
|---|
| Protein accession | YP_003121699 |
|---|
| Protein GI | 256421046 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3781] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.157888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.175148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATT ACAACCCGAA AGCATGGTTT ACTTTTATCT TCCGCTTCCA TAAGGGAGAT
ACTGTCCGGA AGCTGTTTCC CATGTTTATA GCCCTGTCTG CCTATTCTGC GCTGGTAGCC
TTTCTTGAAC TGGAATTACT GAAGCTGTCC CCCAATAGTG ACCTGAAACA GATCACTTTA
ATCCATTCAC TATTAGGTTT TGTCATCTCT CTCCTGCTTG TATTCCGCAC CAATACGGCC
TATGACCGTT GGTGGGAAGG CCGTAAGCTG TGGGGAGCAC TGGTGAACAA CAGCCGTAAC
CTGGCGCTTA AACTGAACGC CATGTTACCA GCTTCGAATA CCGCTTCCCG TGAGTTCTTC
AGGATCATGA TCCCCAATTA TGCCTTTGGT CTGAAGAACC ATCTGCGTAA CCTGTATCAG
CCCGAAGAAT TTCAACAGGC AGATAGTATG CAGCTGCAGC AGGATAAACA TGTACCAAAT
CAGATAGCAG CTAAAATCAT AGCGCATGTC CATGAACTTT ACCGCCAGGG ACAGATCAGC
GGAGAACAGC TGCTTAGTCT TAACCCCGAG CTGCTGTCCT TTACGGATAT CTGCGGCGCC
TGCGAGCGGA TCAGGAATAC CCCTATTCCT TTTTCCTACA GTGTCTTCAT TAAAAAGTTT
ATCTTTTTCT TTGTCATGAC CCTGCCCCTG GGCTACGTAT TTACCCTGCA CTATCTGATC
ATACCTGTGG TGGTATTCAT TTTCTATGTA CTGGCCAGCC TTGAGCTGAT CGCTGAAGAG
ATAGAAGACC CCTTTGGATT TGACGCGAAT GACCTGCCTA CGGACACGAT TTCTACCAAT
ATCCGCAAAC ATGTAGGAGA GATATTGTAA
|
|---|
| Protein sequence | MIDYNPKAWF TFIFRFHKGD TVRKLFPMFI ALSAYSALVA FLELELLKLS PNSDLKQITL
IHSLLGFVIS LLLVFRTNTA YDRWWEGRKL WGALVNNSRN LALKLNAMLP ASNTASREFF
RIMIPNYAFG LKNHLRNLYQ PEEFQQADSM QLQQDKHVPN QIAAKIIAHV HELYRQGQIS
GEQLLSLNPE LLSFTDICGA CERIRNTPIP FSYSVFIKKF IFFFVMTLPL GYVFTLHYLI
IPVVVFIFYV LASLELIAEE IEDPFGFDAN DLPTDTISTN IRKHVGEIL
|
|---|
| |