Gene Cpin_1994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1994 
Symbol 
ID8358145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2432519 
End bp2433817 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content46% 
IMG OID644964182 
ProductL-fucose transporter 
Protein accessionYP_003121691 
Protein GI256421038 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID[TIGR00885] L-fucose:H+ symporter permease
[TIGR01272] glucose/galactose transporter 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.486095 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGAG CCGCAATGCC CACTTCCACA GTTAAGGCAA ACATCGATAC AAAGAAGAGT 
TACCTGTTCC CGTTTATACT GGTGACGAGT TTATTTTTTC TATGGGCGCT GATCCACAAT
ATGAGCCCTA TCCTTATTCC ACACCTGAAG AAGGCTTGTC AGCTGACAGA CATGCAATCT
GCATTTATTG ATTCTGCTGT CTTCGCGGCC TACTTCCTGA TGGCATTGCC GGCAGGTGCG
GTTATGAAAA GGTTCGGATA TAAGGCGGGT ATTATTCTGG GCCTCTGCCT GTACGCATTG
GGTGCATTTC TTTTTCTTCC GGCCGCCAGC ACCCGTGATT ACAGCTTCTT CCTGGGCGCT
TTGTTTATTA TCGCTACCGG TCTTACTTTC CTTGAAACGG CTGCAAATCC TTATGTGTCA
GTATTGGGTA GTCCTGAGAC AGCTACTACC CGTCTGAACC TCGCCCAATC CTTTAATGGT
GTGGGTGCGA TGATAGCACC GATATTAGGC GCAAAATTTA TTCTTTCCGG TACGGAACTT
TCTAAAGAAC AACTGGCTGC CATGTCTCCG GACGTCTTAC AGCAATATCT TGTAGGAGAA
GCGAGTACCG TAAAGATTCC CTACCTCGTG ATCGGCATAG TGGTATTAAT GATCGCGGCA
CTTTTTGTTG TGACAAAAAT GCCGGAAGTA GTTGAGCCGG AAGATGAAAA GTTTGATGAA
ACAGCAGGTA CAAAAGGTAG CATCTTCAGA CACAGACACC TGATTGCTGC GGTCGTGACA
ATGTTCTTTT ATATCGGCGG ACAAGTCGGT GTAAATGCTT TCTTTATCCG TTTTGCGAAG
TATACTGCGG GTATTGGTGA AAAAGAAGCT GCCGTGTTGC TGGGTTCTGT AGCAGGACTT
GGCTTTATGA TTGGTCGTTT CTTTGGTACT TTCCTGATGC GTACGATCAA GCCGCAAACA
TTACTTTCAC TCTATGGTGT GGTGAATGTG GCGCTGATCC TGATCGCTAT GATGACCAAA
GGACAGATCG CTGTCTGGAC TGTGCTGGCG GTACCGTTCT TCATGTCTAT CATGTTCCCA
ACTATATTCT CATTGGGTAT CAAGGGCCTG GGAGGTGATA CGAAATTCGG TTCTTCACTG
ATCATTATGT CTATCGTAGG TGGCGCTATT TTCCCGCCAC TGATGGGATT GATCTCTGAT
AATTCCAATA TCCAGATGGC CTATATTCTG CCATTGATCT GTTTTGCAGT GGTGGTATGG
TTTGGTACAA AAGGGTACAA ACTCGATAAA GCACACTAG
 
Protein sequence
MAGAAMPTST VKANIDTKKS YLFPFILVTS LFFLWALIHN MSPILIPHLK KACQLTDMQS 
AFIDSAVFAA YFLMALPAGA VMKRFGYKAG IILGLCLYAL GAFLFLPAAS TRDYSFFLGA
LFIIATGLTF LETAANPYVS VLGSPETATT RLNLAQSFNG VGAMIAPILG AKFILSGTEL
SKEQLAAMSP DVLQQYLVGE ASTVKIPYLV IGIVVLMIAA LFVVTKMPEV VEPEDEKFDE
TAGTKGSIFR HRHLIAAVVT MFFYIGGQVG VNAFFIRFAK YTAGIGEKEA AVLLGSVAGL
GFMIGRFFGT FLMRTIKPQT LLSLYGVVNV ALILIAMMTK GQIAVWTVLA VPFFMSIMFP
TIFSLGIKGL GGDTKFGSSL IIMSIVGGAI FPPLMGLISD NSNIQMAYIL PLICFAVVVW
FGTKGYKLDK AH