| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1982 |
|---|
| Symbol | |
|---|
| ID | 8358133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2421312 |
|---|
| End bp | 2422709 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644964170 |
|---|
| Product | isopropylmalate isomerase large subunit |
|---|
| Protein accession | YP_003121679 |
|---|
| Protein GI | 256421026 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.211248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.733676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAA CATTATTTGA CAAGATCTGG GACAGCCACG TAGTGGTTAG CAAGCCCGGC
TTTCCGGATG CAGTATACAT CAATACACAT TTTATTCACG AAGTGACCAG TCCACAGGCT
TTTGACGGAC TGCGTAAAAG AGGTATACCG GTTTTCCGTA CGGCTAAGAC CCGTGCGACA
GCCGACCATA ACGTACCTAC CATTGACCAG CACCTGCCGA TTAAAGAGGC CCTGAGCCGC
AAACAGGTAG AGATGCTGAC TTCCAATACC AAAGAATTCG GTGTAGAGCT GTATGGTCTG
GGCCACCCTT ACCAGGGTAT TGTACACGTA ATCGGCCCTG AGCTGGGTAT TACACTGCCA
GGTATGACTA TCGTGTGTGG TGACAGCCAT ACCAGTACGC ATGGCGCTTT TGGTGCGATC
GCTTTCGGTA TTGGTACGTC CGAGGTTGAA CAGGTACTGG CTACCCAGTG TATTCTGCAA
TACCGCCCGA AACGCATGAA GATTGAGGTG AACGGTCAGC TGAAAAAAGG TGTTGTTTCC
AAAGACATCA TTCTGTATAT CATTTCTAAA ATATCAGCTT CCGGCGCTAC CGGTTATTTT
GTGGAATATG CCGGTGAGGC GATCCGCAGC CTGAGCATGG AAGCCCGCAT GACCATCTGT
AATATGAGTA TTGAGATGGG CGCGCGTGGA GGTCTGATCG CTCCTGATCA AACCACTTTC
GATTATATCA AAGGCCGGGA GTTTGCTCCG AAGGGTGCTG AGTGGGATAA GGCCCTGGCA
TACTGGGAAA CACTGTATAC CGATGCTGAT GCTGAGTTTG ATGTAGTACT GACATTTGAT
GCCGCTGATA TCGAACCAAT GATCACTTAT GGTACGAACC CGGGTATGGG TATCGGGGTA
ACCCAGCACA TTCCGTCGCT GACTGAGGTG GATGACAAAG AAAAACCATC TTTCAGGAAA
TCCCTGGAGT ATATGGGACT GGAAGCTGGT AGCGGGTTGC TGGGTAAGAA AGTGGATTAT
GTATTTATCG GTAGCTGTAC CAACTCCCGT ATTGAAGACC TCCGTATGGT GGCTGACTTT
GTAAAGGGTA AGAAAAAGGC GGAAGATGTA GTGGTATGGA TCGTACCTGG TTCTAAACAG
GTAGAAGCGC AGGCGAAGGA AGAAGGTATT GATAAAATAT TTGAAGCAGC GGGCTTCCAT
CTGCGTCAAC CAGGTTGCTC TGCATGTCTG GGTATGAACG AAGATAAAGT GCCTGCCGGC
ATGTATTGTA TTTCTACTTC CAACCGTAAC TTCGAAGGTC GTCAGGGTCC TAACGCCCGT
ACCTTCCTGG CCAGCCCGTT GTCAGCAGCA GCAGCAGCTA TCACTGGTAA AGTAACAGAT
GTAAGAGAAC TGGTATAA
|
|---|
| Protein sequence | MGKTLFDKIW DSHVVVSKPG FPDAVYINTH FIHEVTSPQA FDGLRKRGIP VFRTAKTRAT
ADHNVPTIDQ HLPIKEALSR KQVEMLTSNT KEFGVELYGL GHPYQGIVHV IGPELGITLP
GMTIVCGDSH TSTHGAFGAI AFGIGTSEVE QVLATQCILQ YRPKRMKIEV NGQLKKGVVS
KDIILYIISK ISASGATGYF VEYAGEAIRS LSMEARMTIC NMSIEMGARG GLIAPDQTTF
DYIKGREFAP KGAEWDKALA YWETLYTDAD AEFDVVLTFD AADIEPMITY GTNPGMGIGV
TQHIPSLTEV DDKEKPSFRK SLEYMGLEAG SGLLGKKVDY VFIGSCTNSR IEDLRMVADF
VKGKKKAEDV VVWIVPGSKQ VEAQAKEEGI DKIFEAAGFH LRQPGCSACL GMNEDKVPAG
MYCISTSNRN FEGRQGPNAR TFLASPLSAA AAAITGKVTD VRELV
|
|---|
| |