| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1969 |
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| Symbol | |
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| ID | 8358120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2402455 |
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| End bp | 2405625 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644964157 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003121666 |
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| Protein GI | 256421013 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00020472 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0816221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCAA ATACTTTTAT ACGCAGACCG GTTACCGCAA TAGTTATTTC TGTTGTACTG
GTGCTGGTAG GTTTGCTGGC GATGACCAAC CTGCCCATCG GCCAGTACCC GGAAATTTCG
CCCCCCACTG TACAGGTGAC CGGTACTTAT ATCGGTGCGG ATGCACAGAC GGTGGAGCAG
ACAACAGCTA CTCCTGTGGA AGTGCAGGTG AACGGTACGC CTGGTATGAC TTACATGACC
AGTAACAGTA CCAACAGTGG TGCAATGAGT CTGACCGTGA ACTTCGAAGT AGGTACCGAC
ATCAATATCG CCGCACTGGA CGTACAGAAC CGTGTGGGTA TTGCGCAGCC AACCCTGCCT
CAGGAGGTAC AACGTTTAGG TCTGACCGTA AGAAAGCGTA ACCCCAGTAT CCTCATGCTG
GTGGCTTTAT ATTCTCCGAA TGGTACCCAT GATGTAACCT TCCTGGATAA CTATACCAAC
GTTTACATCA AGGATGCGTT GCTGCGTGCG AAAGGTGTGG GTGATATCTT CACCCGTGCG
GATGACTTCA GTATGCGTGT ATGGCTGAAA CCTGACAAGC TGGCCCAGAT GGGTGTAACA
GCAGAAGAGG TGAGAGCTGC GATTACTGAA CAGAATGCGC AGATCTCCGC AGGTACCGTA
GGTGCTCCTC CTCAGAAAAC CGGACAGACA TATGAGTATA CCATCTTTGT AAAAGGTCGT
CTCGTAACAG CGGAGGAATT TGGTAATATC ATTATCAAAA CCCGTCCGGA TAACGGAGCG
GTTGTATACC TGAAAGATGT TGCCCGTGTA CAACTGGGTA AATTCAGCTA TAGCAACAAC
TCCTATGTGG ATGGCAAGAG AGCGTCTTAC CTGCTGGTTT ACCAGGCGCC AGGTAGTAAC
GCGATCGAAA CAGCAGAAGC GGTATATGAA ACAATGGAAC AGCTGAGCAA AACTTTCCCG
AAAGACGTAG CTTATGTAGT ACCATTTGAG TCTGTATCCG TGATCGAGGT GTCTATCCAC
GAGGTAGTAG AAACCCTGCT GGAAGCACTC GTACTCGTGG TGATCGTGGT ATTCCTCTTC
CTGCAAAGCT GGAGGGCGAC CATTATCCCG GTACTTGCTA TTCCTGTATC CATCATTGCG
ACGTTCATCT TCTTTATACC ACTTGGATTT ACCATCAACA CCCTGACCCT GTTCGGTTTC
GTACTGGCGA TCGGTATCGT GGTGGATGAC GCCATTGTGG TGGTGGAGGC GGTCCAGCAT
AATATGGACC ATGAACAGAT GACGCCGAAG GAAGCGACTT ATGCGGCGAT GAAAGAGATC
TCCGGACCTG TAATGGCGAT CGCCCTGATC CTCGCAGCGG TATTCGTACC GGTAGGATTT
ATACCAGGTA TCGTGGGACG TCTGTATCAG CAGTTTGCGA TCACGATCGC GATCTCCGTA
CTGATCTCTG CGTTTGTGGC ATTGTCTCTG ACGCCGGCAC TGTGTACGCT GATCCTGCGA
CCTATGCACC TGGATAAGGA TTCAAAAGGT CTGAATAAAT TCTTCTTCAA GTTCAACGTA
TGGTTTGGTC ATGTAACCAG CCGTTATTCA TTGGGTGTGA AGAAGAGTAT CCGTTGGTCG
CGTTATGTGA TCATACTGCT GCTTTGTATT ATGGTAGGTA CCTTATTCCT CTTCAGAGGT
AAGCCGACAG GCTTTATTCC GACAGAGGAT GATGGTCGTA TATATATCAC TTTTGACCTG
CCGGAATCAT CTTCCACTGA GCGGACGATT GCTGTCATGA CAGAAATGAT GCATACACTG
GATAGCGTAA AAGCGATCGG TCACTATGCA GCATTGGGTG GTCTGAACGT AGTAAGTTTC
GCGACCAAAT CAAACAGTGG TACGATCTTC TGTCAGCTGA AACCATGGGA TGAACGTAAG
GACAAATCTC AGCAGATCTT TGCGCTGGTA GGGCAACTCC AGGCAAAACT CTCCAGGTTT
AAGGAAGCCA ATGTGGTGGT AATTCCGCCT CCGGCGATTC CTGGTCTGGG TTCTACAGCA
GGTTTCTCCT TCATTCTTCA GCAGAAGAGT GGTGGTGGCG ACATCAAAGA ATTTGAAGGT
GTACTTCAGA AATTCACGAT GGCGATCAAC CAGCGTCCTG AAATCGCAAG AGCGTTCTCC
TTCTTTACCG CACGTACTCC TGGTTACCAA CTGGAGATAG ACCGTGAAAA GGCGAAGAAG
ATGGGCGTAC AGATATCGTC TATTGCCACT GCATTGCAGA CCTATCTGGG TAGTGCTTAT
GTGAATGACT TTACGGTATA CGGCCGTAAC TTCCGTGTGG TAACGCAGGC GGATTCCACT
TACCGTGGCG ATATCAAAGA TCTGTCACAA TATTTTGTGC GCAACTCTGC TGGTACGATG
GTGCCATTGA GTGCGCTGAC TTCCTATAAG GTGACGGAAA GTGCGCCGGT TATCTCTCAC
TATAACCTGT TCCGTTCTGC GGAAATAAAC GGTAGCCCTG CTCCTGGTTA TAGTAGTGGT
GACGCGATCA AGGCATTGCA GGAAGTAGCT GCACAGGTAT TACCGGAAGG TTATGGATAT
GAGTTCTCCG GTTTGAGCCG TGAGGAGTTA TTATCAGGAT CGAAGACTGT TTACATCTTC
GCCCTGTCTA TCATCTTCGT ATTCCTCTTC CTGGCAGCTC TTTATGAAAG CTGGTCGGTA
CCGTTCTCTG TACTGCTGGC CGTACCTATC GGGGCCTTTG GTGCGATCCT GACACTGACT
TTCCTTCCTG CCATTACGAA TAACGTTTAT GCGCAGATTG GTCTGATCAC CCTGATTGGT
CTCTCGGCAA AGAATGCGAT CCTGATCGTG GAGTTTGCAA AAGAGCGTGT GGACAGGGGG
ATGGAACTGG TCACGGCGAC TGTGGAAGCG GCCAAGCTGC GTCTGCGTCC GATCATCATG
ACTTCCCTTG CGTTCCTGTT AGGTATCATG CCGCTGGTAA TATCCAGTGG TGCGGGTGCT
GAATCCCGTA AAACAATGGG ATGGACCGTA TTGGGTGGTA TGTTCACAGC GACCTTCCTG
GCGATCTTTA TCGTACCGGT GCTGTATGTG GTAATTACCC GTCTGGCATA TGGAAAGGAT
AAACTCAAAC AAATGCAGGA AAATCACAAA GCGATGCAAC ACGAATTATA A
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| Protein sequence | MIANTFIRRP VTAIVISVVL VLVGLLAMTN LPIGQYPEIS PPTVQVTGTY IGADAQTVEQ
TTATPVEVQV NGTPGMTYMT SNSTNSGAMS LTVNFEVGTD INIAALDVQN RVGIAQPTLP
QEVQRLGLTV RKRNPSILML VALYSPNGTH DVTFLDNYTN VYIKDALLRA KGVGDIFTRA
DDFSMRVWLK PDKLAQMGVT AEEVRAAITE QNAQISAGTV GAPPQKTGQT YEYTIFVKGR
LVTAEEFGNI IIKTRPDNGA VVYLKDVARV QLGKFSYSNN SYVDGKRASY LLVYQAPGSN
AIETAEAVYE TMEQLSKTFP KDVAYVVPFE SVSVIEVSIH EVVETLLEAL VLVVIVVFLF
LQSWRATIIP VLAIPVSIIA TFIFFIPLGF TINTLTLFGF VLAIGIVVDD AIVVVEAVQH
NMDHEQMTPK EATYAAMKEI SGPVMAIALI LAAVFVPVGF IPGIVGRLYQ QFAITIAISV
LISAFVALSL TPALCTLILR PMHLDKDSKG LNKFFFKFNV WFGHVTSRYS LGVKKSIRWS
RYVIILLLCI MVGTLFLFRG KPTGFIPTED DGRIYITFDL PESSSTERTI AVMTEMMHTL
DSVKAIGHYA ALGGLNVVSF ATKSNSGTIF CQLKPWDERK DKSQQIFALV GQLQAKLSRF
KEANVVVIPP PAIPGLGSTA GFSFILQQKS GGGDIKEFEG VLQKFTMAIN QRPEIARAFS
FFTARTPGYQ LEIDREKAKK MGVQISSIAT ALQTYLGSAY VNDFTVYGRN FRVVTQADST
YRGDIKDLSQ YFVRNSAGTM VPLSALTSYK VTESAPVISH YNLFRSAEIN GSPAPGYSSG
DAIKALQEVA AQVLPEGYGY EFSGLSREEL LSGSKTVYIF ALSIIFVFLF LAALYESWSV
PFSVLLAVPI GAFGAILTLT FLPAITNNVY AQIGLITLIG LSAKNAILIV EFAKERVDRG
MELVTATVEA AKLRLRPIIM TSLAFLLGIM PLVISSGAGA ESRKTMGWTV LGGMFTATFL
AIFIVPVLYV VITRLAYGKD KLKQMQENHK AMQHEL
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