| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1967 |
|---|
| Symbol | |
|---|
| ID | 8358118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2399891 |
|---|
| End bp | 2401222 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964155 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003121664 |
|---|
| Protein GI | 256421011 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000399706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.35271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG TATTTTATCT GACCGCCGTA CTAAGCGCCG TGCTGTATAA TGCACCGTCT
TATGCGCAAC AGGTCTCCGA TTCACTGCTT CCTCAAGCCA CCCTCCAGGC TTGTATTCAG
TATGCGCTCA CCCACCAGCC GGTTGTGAAA CAGGCCAGAC TGGATGAGGA TATTACTGAA
TACACCATCA AGGGAAAGCT TGCGGATTGG TACCCGCAGA TTGGGGTAGA TTACAGCCTC
AACCACTATC TTAAGATTCC CACCTCCTAT TTTAACGGGA ACTATGTACA GTTGGGCGTA
GAAAACAACT CCGCAGCTTT GTTCCAATGG AACCAGAACC TGTTTACCCG TGATCTTTTG
CTGGCAGGCA GAACTGCCCG TGACGTACGC AAACAGGCAA AACAAAACAC AGAAAGCTAT
CGTATCGATG TTGTCGCTAA CGTGACAAAG GCTTATTACG GTATGCTGCT GACTGAACGT
CAGATAGATG TCCTGGATGA AGATGTGACA CGTCTGGAAC GTAGTCTGAA AGACGCTTAC
AACCAATACC AGGGTGGTAT TGTGGATAAA ACCGACTATA AAAGGGCGAC TATCTCCCTG
AATAACACCC GGGCGCAGAG AAAGACAGCT GCGGAGCAAC TGAAAGCCAG CGAAGCACAG
CTTCGTCAGC TGATGGGGTA TCCTGTGAAT GGTCCGCTGC CACTGGTATA TGATACCGTG
CAGATGGTTC AGAACATACA GCTGGATACG ACGGTGACGG TGACTTATAA TAACAGGGTC
GAGATGCAGT TGCTGGAGAC GCAGAAAACC CTTTTAGATG CGCAGCTGAA GTATAACAAG
TGGAGCTTTA TTCCTACTGT TTCTGCATTT GCGAACTATA ACTTCAACTA TCTGAACCCG
GAATTCTCCA AGTTGTACAA CAACAACGTA CCGAGTTCAC AGATAGGTCT CAAAGTGTCC
CTGCCTATTT TCCAGGGGTC TAAACGTATC TACAACATTC GCCAGGCGGA GCTGCAGATC
AAACGTAATG ACCTGGATAT AGAAAACCTG CGCAACCAGA TCAATACTGA ATATACCCAG
GCGATGGCTA CCTATAAGGG GAACCTCAAC CAGTTTTATG TGATGAAGGA GAATGTGGAC
CTGGCACAGG AAGTATACAG TCTGATAGAA ATGCAGTACA GGGAAGGGGT GAAAACCTAT
CTTGAGGTGA TCACTGCACA GACAGACCTG CGTTCAGCAC AACTGAATTA CTATAACGCA
ATGTATACTG TGCTGTCCAG CAAAGTGGAT CTGCAACGTT CATTGGGTAC AATATCAACA
AACAACTACT AA
|
|---|
| Protein sequence | MKRVFYLTAV LSAVLYNAPS YAQQVSDSLL PQATLQACIQ YALTHQPVVK QARLDEDITE
YTIKGKLADW YPQIGVDYSL NHYLKIPTSY FNGNYVQLGV ENNSAALFQW NQNLFTRDLL
LAGRTARDVR KQAKQNTESY RIDVVANVTK AYYGMLLTER QIDVLDEDVT RLERSLKDAY
NQYQGGIVDK TDYKRATISL NNTRAQRKTA AEQLKASEAQ LRQLMGYPVN GPLPLVYDTV
QMVQNIQLDT TVTVTYNNRV EMQLLETQKT LLDAQLKYNK WSFIPTVSAF ANYNFNYLNP
EFSKLYNNNV PSSQIGLKVS LPIFQGSKRI YNIRQAELQI KRNDLDIENL RNQINTEYTQ
AMATYKGNLN QFYVMKENVD LAQEVYSLIE MQYREGVKTY LEVITAQTDL RSAQLNYYNA
MYTVLSSKVD LQRSLGTIST NNY
|
|---|
| |