| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1955 |
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| Symbol | |
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| ID | 8358106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 2385727 |
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| End bp | 2388081 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964143 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003121652 |
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| Protein GI | 256420999 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.3591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAA ATCTAGTAAT AGTTGAGTCT CCGGCGAAAG CCAAGACGAT AGAAAAGATA
CTGGGCAAAG ACTTCGAGGT AAAGTCCTGC TTTGGTCACA TCCGTGATCT GGAGAAGGAT
GACATGGGTA TCGACATCGC CAACAACTTC AAACCTAAGT ACACTATACC TGACGATAAA
GAGAAGATTG TTAAGGAATT AAAGAAACTC GCCAAAGACA CTGACGAAGT TTGGCTAGCA
ACGGATGAGG ACCGTGAGGG TGAGGCCATT TCATGGCATT TGTGCGAAGT ACTCGGACTG
GATCCTGACG TAACCAAGCG TATCGTCTTC CATGAAATCA CCAAGCCTGC CATCGAAAGA
GCCGTACAAC AACCCCGTCT ATTAGATATG AACCTGGTCA ATGCCCAGCA GGCCAGACGT
ATTCTTGACA GAATAGTAGG TTTTGAATTA TCTCCGGTGC TCTGGCGTAA AATGAGCATG
CGTAATTCAT TGTCTGCCGG CCGTGTACAA TCTGTTGCGG TAAGACTGAT CGTGGAGCGT
GAACGTGAAA TCAATACATT CAATGCCGTT AGCAGTTTTA AAGTAGAAGC TTTCTTTACT
GCTAAAGATC TTCAGGGCAA AAATATTACT TTTAAGGCAG AAGGACCTAC CCGTTTCAAG
ACGGCGGAAG ATGCCGAAAA GTTCCTGCAG CAGTGCATTG GCGCTGCTTA CTCCGTGAAA
GACATTCAGG TAAAACCAGG TAAAAAATCA CCTGCCGCAC CTTTTACAAC GTCTACACTC
CAGCAGGAAG CCAGCCGTAA ACTGGGCTAC AGCGTTTCCA AAACCATGCT GCTCGCTCAG
AAACTCTATG AAAGTGGTAA GATCACTTAC ATGCGTACTG ACTCCGTGAA CCTGTCAGAT
ACAGCCCTCG GGGATATCCA GAACGCTATC ACGACTAACT ACGGTCAGCG ATACCACCAA
CACCGTAAGT TCAAGAACAA GAATGAATCA GCACAGGAAG CGCACGAAGC CATCCGTCCT
ACATATATGG AAAATGCGAC TGTCGATGAC AGTGATACCA AAAAACTGTA TGAACTGATC
TGGAAGCGTA CCATCGCCAG CCAGATGAGT GATGCAGAAC TGGAAAAGAC CATCGCAAAA
ATCGATATCT CCACCAACCA CGAAGAGCTT ACTGCCAGTG GTGAAGTGCT GAAATTCGAC
GGATTCCTGA AAATATACAT GGAAGGTAAA GACGATGAAG ATGTAAGCGA TGAAGAAGAA
TCAGACGGTT CTTTACCTGC CCTCACGGTT AAACAGGCAC TCGATCTGAA AGAAATGAAG
GCGACAGAAC GTTATAGCCG TCCTGCTCCC CGTTATACAG AGGCAAGCCT GGTAAAGAAA
CTGGAGGAAC TCGGTATCGG TCGTCCATCT ACTTACGCGC CAACTATTAC AACCGTACAA
AAACGCGGGT ACGTAGAGAA ACGCGATAAG GAAGGTATAA AAAGAGACTT CCGCATCCTG
AGCCTGAAGG CTGACAAGAT CACGAAAGTA ACAGAAAGCG AAAATACCGG TGCGGAGAAA
TCCAAACTGT TCCCGACAGA CCTCGGCATG ATCGTGACCG ACTTCCTGAA CCAGTATTTC
AGCTCCGTAA TGGACTACGG TTTTACCGCC AAGATCGAAG GAGAGTTTGA CGAAGTGGCA
CATGGTAAGA AGATCTGGAA TAAGATGCTG AACGACTTCT ATACGCCTTT CCATAAAGAT
GTGGAAAACA CACTGGAAAA AGCAGAAAGA GTAAAAGGCG AACGTCAGCT CGGAACCGAC
CAGGAAACTG GCAAACCAAT CGTAGCACGT ATGGGACGTT ATGGCCCGAT GATCCAGATC
GGTAAAGCGG AAGACGAGGA AAAACCGAAG TTCGCAAAAA TGAAGTCCAC CCAAAGTATA
GAAACCATTA CTTTAGAGGA AGCAATGGAA CTGTTCAGAC TTCCCCGTAA CCTGGGACAG
TTTGAAGATC AGGACGTCCT TGTGAACATC GGACGCTTCG GACCATACGC AGCACATAAT
AAACAATTCT ATTCCCTGAA AAAGGAAATG GACCCATACA CAGTGGAGCT GGATGAAATA
GCACCGCTGA TCGTGGAAAA AAGAACTGCT AAAGACGAGC GTACCATCAA GATCTTCGAA
AAAGAAAAGA TCCAGATACT CAAAGGCCCA TACGGACCAT ATATTAAACA GGGGCTTAGA
AACTATAAGA TCCCTAAAGA AAAGATCGAC GCCGCTGCTG ACATCACACT GGAAGAAGCC
AAAGCAATCA TTGAAGATGT GAAGGCAAAT CCTCCAAAGA AAAAAGCGCC TCCGAGGAAG
AAAAAGGCGG AATAA
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| Protein sequence | MAKNLVIVES PAKAKTIEKI LGKDFEVKSC FGHIRDLEKD DMGIDIANNF KPKYTIPDDK
EKIVKELKKL AKDTDEVWLA TDEDREGEAI SWHLCEVLGL DPDVTKRIVF HEITKPAIER
AVQQPRLLDM NLVNAQQARR ILDRIVGFEL SPVLWRKMSM RNSLSAGRVQ SVAVRLIVER
EREINTFNAV SSFKVEAFFT AKDLQGKNIT FKAEGPTRFK TAEDAEKFLQ QCIGAAYSVK
DIQVKPGKKS PAAPFTTSTL QQEASRKLGY SVSKTMLLAQ KLYESGKITY MRTDSVNLSD
TALGDIQNAI TTNYGQRYHQ HRKFKNKNES AQEAHEAIRP TYMENATVDD SDTKKLYELI
WKRTIASQMS DAELEKTIAK IDISTNHEEL TASGEVLKFD GFLKIYMEGK DDEDVSDEEE
SDGSLPALTV KQALDLKEMK ATERYSRPAP RYTEASLVKK LEELGIGRPS TYAPTITTVQ
KRGYVEKRDK EGIKRDFRIL SLKADKITKV TESENTGAEK SKLFPTDLGM IVTDFLNQYF
SSVMDYGFTA KIEGEFDEVA HGKKIWNKML NDFYTPFHKD VENTLEKAER VKGERQLGTD
QETGKPIVAR MGRYGPMIQI GKAEDEEKPK FAKMKSTQSI ETITLEEAME LFRLPRNLGQ
FEDQDVLVNI GRFGPYAAHN KQFYSLKKEM DPYTVELDEI APLIVEKRTA KDERTIKIFE
KEKIQILKGP YGPYIKQGLR NYKIPKEKID AAADITLEEA KAIIEDVKAN PPKKKAPPRK
KKAE
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