| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1920 |
|---|
| Symbol | |
|---|
| ID | 8358071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2344314 |
|---|
| End bp | 2345993 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644964108 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_003121617 |
|---|
| Protein GI | 256420964 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.316407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAA ACAAATACAG CAAAACGCTC ACGCAGGATC CAACACAGCC CGCCACACAG
GCGCAGCTGT ACGCACTCGG TTTAACTGAA GAAGACCTGA AGAAAGCGCA GGTAGGCATT
GCCAGTATGG GCTATGACGG TAATCCATGT AACATGCACC TCAATGACCT CGCTCAGGAG
GTCAAGAAAG GGGTCTGGGC TAATAATCTG GTCGGACTCA CTTTCCATAC TATTGGCGTC
AGCGATGGTA TGACAAATGG TACTCCGGGT ATGCGTTATT CCCTGGTCAG CCGCGACCTG
ATTGCTGATT CCATCGAAAC CGTTGTAGGC GCTCAGTATT ATGATGGTGT GATCACCGTA
CCTGGCTGTG ATAAAAACAT GCCTGGCTCC CTGATCGCGA TGGGACGTCT GAATCGTCCT
TCTATCATGG TATATGGCGG TTCTACAGCT CCTGGTAAAT ACCAGGGAAA AGACCTGAAC
ATTATCTCTG CATTTGAAGC GCTGGGTCAG AAAATGGCTG GTCAGCTCAG CGATGAAGAC
TTCAAAGGCA TTGTACAGCA TTCCTGCCCT GGCGCCGGCG CCTGTGGCGG TATGTATACG
GCAAATACCA TGTCTTCTGC TATTGAAGCA TTAGGTATGA GCCTTCCTTA TAGTTCTTCT
AACCCTGCAC TCAGCAAGGA CAAAAAAGAA GAATGTCTGT CAGCTGGTAA ATATATCCAC
ATCCTCCTGG AGAAAGATAT CAAGCCTTCT GATATCATGA CGCTGGAAGC ATTTGAAAAT
GCGGCTACCG TTGTGATGGC ACTGGGTGGT AGTACCAATG CCGTACTGCA CTTCATTGCA
ATCGCAAAGG CAATAGGCGT GAAATTCGGA TTACCTGAAT TCCAGCGTAT CAGCGATAAA
ACACCACTGA TCGCTGACCT GAAACCAAGT GGTAAATACC TGATGGAAGA CCTGCACAAC
ATTGGCGGCG TTCCATTAGT AATGAAATAT CTGCTGAAAA AAGGCTACCT GCATGGTCAC
TGTCTGACAG TAACCGGCAA GACCCTGGCA GAAAACCTGG AAAGTGTACC AGATCTGGAA
TTCGAAGGAC AGGATATCGT TGTTCCGGTG GAAAAACCAA TAAAAGCGAC TGGTCACATC
CAGATGCTGT ATGGTAACCT GGCAGAACTG GGTTCCGTAG CCAAGATTAC CGGTAAGGAA
GGACTGAGCT TCCGTGGTCC TGCGCGTGTG TTTGAAGGTG AATATGAACT GATCGCAGGT
ATTCAGAACG GTCGTGTGAA AGCAGGCGAT GTGGTGGTAA TCAGACAGGT AGGTCCAAAG
GGCGCACCTG GTATGCCGGA AATGCTGAAA CCAACATCCG CTATCATGGG TGTAGGTCTT
GGTAAGAGCG TAGCGCTGAT TACAGACGGA CGTTTCTCTG GTGGTACACA CGGTTTTGTA
GTAGGACACA TCACACCGGA AGCGGTAGAA GGTGGTACTA TCGGACTGGT ACAGGACAAT
GACATAATAG AAATTGACGC CGAAAAGAAT ACAATCAACG TGGAACTGAG TGCAGAAGAA
CTGGCTGCCC GCAGGGCGAA ATGGGTAAAA CCTGCGTTGA AAGTAACTAA TGGTGTATTA
TATAAATATG CAAAACTCGT TTCAAATGCA ACAGAAGGAT GTGTTACCGA TGAAGCCTGA
|
|---|
| Protein sequence | MELNKYSKTL TQDPTQPATQ AQLYALGLTE EDLKKAQVGI ASMGYDGNPC NMHLNDLAQE
VKKGVWANNL VGLTFHTIGV SDGMTNGTPG MRYSLVSRDL IADSIETVVG AQYYDGVITV
PGCDKNMPGS LIAMGRLNRP SIMVYGGSTA PGKYQGKDLN IISAFEALGQ KMAGQLSDED
FKGIVQHSCP GAGACGGMYT ANTMSSAIEA LGMSLPYSSS NPALSKDKKE ECLSAGKYIH
ILLEKDIKPS DIMTLEAFEN AATVVMALGG STNAVLHFIA IAKAIGVKFG LPEFQRISDK
TPLIADLKPS GKYLMEDLHN IGGVPLVMKY LLKKGYLHGH CLTVTGKTLA ENLESVPDLE
FEGQDIVVPV EKPIKATGHI QMLYGNLAEL GSVAKITGKE GLSFRGPARV FEGEYELIAG
IQNGRVKAGD VVVIRQVGPK GAPGMPEMLK PTSAIMGVGL GKSVALITDG RFSGGTHGFV
VGHITPEAVE GGTIGLVQDN DIIEIDAEKN TINVELSAEE LAARRAKWVK PALKVTNGVL
YKYAKLVSNA TEGCVTDEA
|
|---|
| |