Gene Cpin_1905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1905 
Symbol 
ID8358056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2327572 
End bp2328120 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content46% 
IMG OID644964093 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003121602 
Protein GI256420949 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGAGCAG CAGTCACATA TACAGAATCC GAATTGGTAC TTGGCCTCAA GGCGAGGAAC 
GAAAAGCATT TCGGGTACTT ATATGATCAT TATTCACCGG CATTATATGG TATTGCACTC
AAAGTGTTGA ACGATGAGGC GACAGCCGGT GATGTGCTGC AGGAAATTTT TCTCAAGATC
TGGCGCGGTA TCGAACGCTA CGATAGCGAA AAGGGACGCC TGTTCACCTG GATGGTGAAT
ATAGCCCGTA ATACTGCCAT TGATACCCTC CGCTCAAAGT CTCATAAGAT GGGACAAAAA
GTTGCAGAAT TAGGGAGCAA CGTTCTTGCG TCAGACCAGC TGGCTATCCA TCCTTCCGTG
GATCACCTCG GATTGGTGAA AGTGTTGGAA CAACTCAGCA AGGAACAACG TGTTATTATA
GACCTGGCTT ATTATAAGGG ATGCACTCAG GATGAGATTG CGAAGATATT GGACATCCCT
CTTGGAACGG TGAAGACCAG GATGCGTAAT GCGATCATAC AATTGCGGAA TATTTTAAAA
CAGATCTAA
 
Protein sequence
MGAAVTYTES ELVLGLKARN EKHFGYLYDH YSPALYGIAL KVLNDEATAG DVLQEIFLKI 
WRGIERYDSE KGRLFTWMVN IARNTAIDTL RSKSHKMGQK VAELGSNVLA SDQLAIHPSV
DHLGLVKVLE QLSKEQRVII DLAYYKGCTQ DEIAKILDIP LGTVKTRMRN AIIQLRNILK
QI