| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1893 |
|---|
| Symbol | |
|---|
| ID | 8358044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2307929 |
|---|
| End bp | 2311045 |
|---|
| Gene Length | 3117 bp |
|---|
| Protein Length | 1038 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964081 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003121590 |
|---|
| Protein GI | 256420937 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.41839 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAT TACTGATCTT TTTATCGCTA TTCCTATGCG TATGCTTCAA CGTGTCCGCC
CAGGATAAAC AAGCGGTATC AGGTACTATC AGAGACGCAG ATGGCAGTCC GCTGCCCGGC
ATTACGATCC TCGAAAAAGG CACTAAGAAC GGCGCGCTTA CAGACGCCGC CGGATCATTC
AAGTTACAGG TGAACCCCAA AGCTGTGCTG GTAATTTCCG GAATCGGTTT TATCTCACAG
GAAATAGCCG TAAATGGCAA TTCCAGCCTC AATGTAAGTC TGGTAGTAGA CAACAAAAAC
CTCGGTGAAG TAGTTGTAAC GGCACTAGGT ATCAAACGTG AAAAGAAATC ACTGGGTTAT
GCACTGCAGG AATTAAGCGG CGATAAACTG GTTGAAGCAA GAGAATCTAA CCTGGCAAAT
GCATTGACTG GTAAAGTATC TGGTCTGCAG GTATTACGTT CAAGTAATGG TCCTGCTGGT
TCTACAAAAA TCACACTGCG TGGTAACAAC TCCCTGACTG GTACTAACCA GCCGTTGATC
GTGGTAGATG GTATTCCTTT GGATAACTTC ACCGGTGCTA CGAACAATGA CTACTGGAAC
CCTTCCAAAG ATATGGGTAA CGGTCTGGCA GATGTTAACC CGGAAGACAT CGAAACGATG
TCAGTGCTGA AAGGACCTTC TGCGGCTGCA TTGTATGGAT CCCGTGCAGG TAATGGCGTT
ATCCTTATTA CCACTAAGAG CGGTAGAAAA CAGAAAGGTG CAGGTATCAC TTACAGTTCT
CAGGTGGGTT TTTCCCAAAT CTTCGCTAGT CCTGACAGAC AAAACACTTT TGCACAGGGT
AGTGAAGGTA TCTTCGATCC ACAGTCTGCA GGTAGCTGGG GGCCGGCGAT CGATGGTCGT
AACGTAACTG ACTGGTCAGG TAAACCAACA ACCCTGCAGT CTTATGACAA CGTAAAAAAC
TACTTCGATA AAGGTTTAAA CTTTAAAAAC ACGATCTCCT TTCAACAGCA GGTAAGTGAA
GGTACTTCTA TCTATACCTC TATTACGCAC CTGACTGATA AAGGTATCAT CCCAGGCAGC
AAACTGAATC GTACTAACCT GACTGCTCGT GCAGTATCCC GTTTTGGTAC CAACAAACGC
TGGACAAGCG ATACGAAAGT ACAGTACATC AATTCAAAGG CAAATAACCG TCCGCAGAAT
GGTGACAATA CTGGTAACGT ATTCCGTACA CTTTATGCAC TGCCTTCCAA TATCGATATC
AGAGATTTCA GCGCTGCTAA AAGAGAAAAT GGCAAAATGT TGTGGTTTGG TTCCGGTAAT
GCAGTGAACC CATACTGGGG CAAACTGTAT GACCTGAACG AAGATATCAG AGACCGTTTC
CTGATGACCG GATCATTGAA ATATGATTTC ACTTCCTGGT TAAATGCTGA GTTGAAAGCA
GGTGCGGATA TCTATGGTAC TAATGCAGAA GCAAAACGTT ATGCAGGTAG CCCTTCTCCT
GCGAATGGTA GCTATAGCCG CAGCAAAGAG ACTTTCTCTG AAGTGAACTA CAGTGCATTG
ATCAGTGCCC GCAAAGACAA CCTGTTTGGC AAACTGGGTG GTGCAGTAAC AGCAGGTGGT
AACCTGATGA AACAACAACG CGACCGTCTG GACGCAAGTG TTGGTGAATT GCAGATCCCT
GACTTCTTCT TCCTGAACAA CGGTCGTTCT AATCCAACTA TCACACCAAC GTCTACTGAA
AAGAGAATTA ACTCTGTATA CGGTACTGTT GGTGTTAACT GGGATGCTTA CTGGTTCGTG
GACGTAACAT TACGTAACGA CTGGTCTTCC GCACTGAGCA AAGCAAACAG GTCTTATTTC
TACCCATCAG TGAGCACATC TCTGATCGTG ACCGATATGA TCAGTCACCT GGGTGGTGAA
ATGCCTAAAT GGTTATCATA TGGTAAAGTA CGTGCGTCTT ATGCAATGGT AGGTAATGAC
CTTGCTCCAT ACAGCCTGTA CAACACCTAT GATGTAAGTA AAGATCCTAA CGGCAATACT
GTTGTAAAAA GAAAGAACAC CCTGTATGAT GCTAATGTAA AGAGTGAGCT GATTAAATCT
ACAGAGGTAG GTGCTGAACT GAAATTGTTC AACAACCGTC TGGGTGTTGA CTTCGCATGG
TATAAATCCA ATGCTACCCG TCAGCTGATC GATCTGCCAA TGGACCCGCT GAGTGGTTAT
TCTTTCAGAA AGATCAATGC CGGTGACATC GAAAACACTG GTATTGAGTT AATGTTGAAT
GCACGTCTGG TTGATAATCC TTCCGGTTTC TCATGGGATA TGGGTGCAAA CTTCTCCAAC
AACAAGAACA CCGTGAAATC AATTTCTCCG GATATTTCCC TGTATTCTTT AGGTGGATTT
GATGATGTAC AGATCTACGC AGCAGCTGGT CAGAAATATG GTGAGATCTG GGGTACAGCA
TACCAGAGAG TAACTGATCC TGCGAGCCCT GCCTTCGGTA AACAGATCGT AAGTGCAAGT
GGTTATCCGC TGGGTACAAG TGATAAAGTA AGATTAGGTA ATCAGCAGCC AAGTGCCATG
CTGGGTATTA CCAACACTTT CTATTATAAG AACCTGTCTC TGGGCTTCCA GGTAGACGGC
CGTTTTGGTG GTAAAATGTT CTCCGGTACC CTTTCTTCAT TGCAGAGAAG CGGTTCAGCA
GCAGAAACTG TTGTGAATGG AAAACGTGAT CCGATAGTAG TAGATGGTGT TGTATATAAT
GATGCAACCA AGACATACGA TCAGAATACA GTAGCAGTAA ATCCTCAGCA ATATTGGGCA
GACGGTATCA ACGTGAGAAA CGTAGGTATA GTAGAAGCTA ATCTGTATGA TGCTTCCAAC
ATTCGTCTGA GAAACCTGAA TATCGCTTAT AATCTGCCTT CCAGATTATT GTCTAAAACA
CTGGTACAGA GAGCGAGCGT TGGTCTGTCC TGCACAAACG TATGGCTCAT CTCCAGCCAC
ATGAAAGGCA TAGATCCTGA GTCTGTATAT GCGACCAACA CGAATGCTAT AGGTTTTGAA
GCTGGTAGTG CGCCTACTTC CCGCACTTTC CTGTTCAATT TATCTGTTAG TTTCTAA
|
|---|
| Protein sequence | MRRLLIFLSL FLCVCFNVSA QDKQAVSGTI RDADGSPLPG ITILEKGTKN GALTDAAGSF
KLQVNPKAVL VISGIGFISQ EIAVNGNSSL NVSLVVDNKN LGEVVVTALG IKREKKSLGY
ALQELSGDKL VEARESNLAN ALTGKVSGLQ VLRSSNGPAG STKITLRGNN SLTGTNQPLI
VVDGIPLDNF TGATNNDYWN PSKDMGNGLA DVNPEDIETM SVLKGPSAAA LYGSRAGNGV
ILITTKSGRK QKGAGITYSS QVGFSQIFAS PDRQNTFAQG SEGIFDPQSA GSWGPAIDGR
NVTDWSGKPT TLQSYDNVKN YFDKGLNFKN TISFQQQVSE GTSIYTSITH LTDKGIIPGS
KLNRTNLTAR AVSRFGTNKR WTSDTKVQYI NSKANNRPQN GDNTGNVFRT LYALPSNIDI
RDFSAAKREN GKMLWFGSGN AVNPYWGKLY DLNEDIRDRF LMTGSLKYDF TSWLNAELKA
GADIYGTNAE AKRYAGSPSP ANGSYSRSKE TFSEVNYSAL ISARKDNLFG KLGGAVTAGG
NLMKQQRDRL DASVGELQIP DFFFLNNGRS NPTITPTSTE KRINSVYGTV GVNWDAYWFV
DVTLRNDWSS ALSKANRSYF YPSVSTSLIV TDMISHLGGE MPKWLSYGKV RASYAMVGND
LAPYSLYNTY DVSKDPNGNT VVKRKNTLYD ANVKSELIKS TEVGAELKLF NNRLGVDFAW
YKSNATRQLI DLPMDPLSGY SFRKINAGDI ENTGIELMLN ARLVDNPSGF SWDMGANFSN
NKNTVKSISP DISLYSLGGF DDVQIYAAAG QKYGEIWGTA YQRVTDPASP AFGKQIVSAS
GYPLGTSDKV RLGNQQPSAM LGITNTFYYK NLSLGFQVDG RFGGKMFSGT LSSLQRSGSA
AETVVNGKRD PIVVDGVVYN DATKTYDQNT VAVNPQQYWA DGINVRNVGI VEANLYDASN
IRLRNLNIAY NLPSRLLSKT LVQRASVGLS CTNVWLISSH MKGIDPESVY ATNTNAIGFE
AGSAPTSRTF LFNLSVSF
|
|---|
| |