Gene Cpin_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1872 
Symbol 
ID8358023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2275154 
End bp2276359 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content48% 
IMG OID644964060 
Productglycosyl transferase family 2 
Protein accessionYP_003121569 
Protein GI256420916 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.803329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATA CGACAAAATA TAACGATCAG TTCACTGCCC GGAAAGCAGC CGTACTGGTG 
CCGACCTACA ACAATGCCAA AACGCTGGAA TCCGTTATAA GAGACGTACT TTCTTATACT
TCCCATGTCA TTGTCGTAAA TGATGGTAGT ACCGACGAAA CTGCCGATAT CCTGGATAGA
TTTCCTCAGA TACAGCGTGT GGAATATACG CCTAACAGAG GAAAGGGGAT CGCTTTGCGC
CGTGGTTTCC GCTACGCTGT TGAGCAGGGA TATGATTATG TGATCACGAT AGATGCCGAC
GGACAGCATT TCGCGTCTGA TCTGCCGGTT ATGCTGGAGA AACTGGAAAC AGAGCAGAAG
GCAATTGTGA TCGGCGCGCG TAATCTGCAA CAGGAAAACA TGCCGGGTAA GAATACCTTC
GCTAATAAAT TTTCTAACTT CTGGTTCTAT GTGGAAACAG GACTGAAAGG ACCGGATACA
CAATCCGGCT ATCGCCTGTA TCCGGTGTAT GCTATGCGCA AGATGCGCTT CTGGTGTACC
AAATATGAGT TCGAAATAGA GGTGCTGGTG AGAAGTGCCT GGAAAGGTAT TAAAATTGAC
TGGGCGCCGA TAAAAGTATA CTATCCGCCT GCGGAAGAAA GGGTTTCTCA TTTCCGCCCC
TTCCGGGATT TCTCCCGTAT CAGTGTGTTG AATACGGTAC TGGTAACAAT TGCTTTTCTT
TACATCAAAC CGAGGGATTT CTTCCGTTAT CTGATGAAGG CGGAGAACTG GCGAAGTATG
TGGTACGACC ATGTACTGAA CAAGGAAGAG TCTAATTTCA GAAAAGCCAT ATCCATCGGC
TTTGGCGTAT TTATGGGTAT TGTACCTATC TGGGGTTTCC AGATGGTAAC GGCGATGGCG
CTGGCGGTGT TGTTCCGGCT GAACAAGGCG TTGGTATTTA TGTCCTGTCA TGTGAGTCTG
CCGCCGATGA TCCCGTTTGT GATCTTCGCC AGTTTTGCCA CCGGCAGACT ATGGGTGAAG
GATGGGAGTT TGTTGCTGCC TTTCAGCACG AATTTATCAC TGGACATCAT CAAACAGAAT
TTATTTCAAT ATTTAACAGG AGCCTGTACG CTGGCAGTAG CCGCCGGTGT TTTGGTGACA
CTGATCGTAT ATGTGCTGCT GGCCATTTTC CGAAACGATC CGGCCAGACA GCGACAGGTA
CGTTAG
 
Protein sequence
MTDTTKYNDQ FTARKAAVLV PTYNNAKTLE SVIRDVLSYT SHVIVVNDGS TDETADILDR 
FPQIQRVEYT PNRGKGIALR RGFRYAVEQG YDYVITIDAD GQHFASDLPV MLEKLETEQK
AIVIGARNLQ QENMPGKNTF ANKFSNFWFY VETGLKGPDT QSGYRLYPVY AMRKMRFWCT
KYEFEIEVLV RSAWKGIKID WAPIKVYYPP AEERVSHFRP FRDFSRISVL NTVLVTIAFL
YIKPRDFFRY LMKAENWRSM WYDHVLNKEE SNFRKAISIG FGVFMGIVPI WGFQMVTAMA
LAVLFRLNKA LVFMSCHVSL PPMIPFVIFA SFATGRLWVK DGSLLLPFST NLSLDIIKQN
LFQYLTGACT LAVAAGVLVT LIVYVLLAIF RNDPARQRQV R