Gene Cpin_1774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1774 
Symbol 
ID8357925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2147080 
End bp2148147 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content45% 
IMG OID644963962 
Productsecretion protein HlyD family protein 
Protein accessionYP_003121471 
Protein GI256420818 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGCTA AGAAGAACAA CCATGCCCGC ACAGACAGAT TAATTACCAC CATCACCGGA 
TGGGCAGCAG GTGTTATCCT GATAGCGCTG GCTATATGGG GAATAAGTAC ATTATTCGAA
CTGCGTAAAT ATGAAGAAAC AAACGATGCG CAGGTAGAAG AATATATCAA CCCGGTCACC
GCAAGAGTGA CAGGTTATAT CAGCAGGATC AATTACGAAG AGAACCAGGA TGTGAAGAAA
GGAGATACCC TGCTTATCAT TGACGATAGC GAATACCAGC TGCAGCAACA GGAAGCAAAT
GCCGCCCTGT TGAATGCACA GGCACAGGTA CAGGTCCTGG AAAGTAACGT AAATACGACT
GCAAAGAATG CGAATGTAAC GGAAGCACAG ATCGCCGCTG CAAAAGCGAA ACTCTGGAAA
CAACAGCAGG AATATGACCG TTACCAGAAG TTGTATGACG CAGAATCTGC TACAAAACAA
CAACTGGAAA ATGTTGAAAC AGCTTTGAAT GTCGCGAAAG CAGACTACCA GACTGTTATC
AATAACTACG ATGCTGCCGT ATCAAAAATC AACGATATCA AATCCCAGAA GGCAGTACTG
GCTGCTGAAA TAGAACGCAG ACAGGCCATG CTTGGACGTA ATAAACTGGA TGTTTCCTAT
ACGGTTATCC GTGCGCCATA TGACGGGAAA ATGGGACGCC GTACTATCCA GGAAGGACAA
TTGATCCAGG CTGGACAAAC GCTTGCATTT ATCGTTAACC AGGCTACCGG AAAATGGATC
ATTGCCAACT TCAAAGAAAC ACAGGTCAGT CATATGCATA TCGGACAGAC GGCCGATATT
GAGATTGACG CTTTTCCCGG TAAGACCTTC AACGGTACGA TAGAATCCTT ATCACCCGCT
ACAGGTTCAA GGTTTTCATT ATTACCTCCC GATAACTCAT CAGGCAACTT CGTGAAAATC
GTACAACGTA TTCCTGTACG TATTAAACTC ACCAGCAACG TAACTGAAAC AGCTTTACTC
CGTGCCGGTA TGAATGCGAC TGTAGCAATC AGTAAGAAAA ATGGCTAA
 
Protein sequence
MTAKKNNHAR TDRLITTITG WAAGVILIAL AIWGISTLFE LRKYEETNDA QVEEYINPVT 
ARVTGYISRI NYEENQDVKK GDTLLIIDDS EYQLQQQEAN AALLNAQAQV QVLESNVNTT
AKNANVTEAQ IAAAKAKLWK QQQEYDRYQK LYDAESATKQ QLENVETALN VAKADYQTVI
NNYDAAVSKI NDIKSQKAVL AAEIERRQAM LGRNKLDVSY TVIRAPYDGK MGRRTIQEGQ
LIQAGQTLAF IVNQATGKWI IANFKETQVS HMHIGQTADI EIDAFPGKTF NGTIESLSPA
TGSRFSLLPP DNSSGNFVKI VQRIPVRIKL TSNVTETALL RAGMNATVAI SKKNG