Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1774 |
Symbol | |
ID | 8357925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2147080 |
End bp | 2148147 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644963962 |
Product | secretion protein HlyD family protein |
Protein accession | YP_003121471 |
Protein GI | 256420818 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGCTA AGAAGAACAA CCATGCCCGC ACAGACAGAT TAATTACCAC CATCACCGGA TGGGCAGCAG GTGTTATCCT GATAGCGCTG GCTATATGGG GAATAAGTAC ATTATTCGAA CTGCGTAAAT ATGAAGAAAC AAACGATGCG CAGGTAGAAG AATATATCAA CCCGGTCACC GCAAGAGTGA CAGGTTATAT CAGCAGGATC AATTACGAAG AGAACCAGGA TGTGAAGAAA GGAGATACCC TGCTTATCAT TGACGATAGC GAATACCAGC TGCAGCAACA GGAAGCAAAT GCCGCCCTGT TGAATGCACA GGCACAGGTA CAGGTCCTGG AAAGTAACGT AAATACGACT GCAAAGAATG CGAATGTAAC GGAAGCACAG ATCGCCGCTG CAAAAGCGAA ACTCTGGAAA CAACAGCAGG AATATGACCG TTACCAGAAG TTGTATGACG CAGAATCTGC TACAAAACAA CAACTGGAAA ATGTTGAAAC AGCTTTGAAT GTCGCGAAAG CAGACTACCA GACTGTTATC AATAACTACG ATGCTGCCGT ATCAAAAATC AACGATATCA AATCCCAGAA GGCAGTACTG GCTGCTGAAA TAGAACGCAG ACAGGCCATG CTTGGACGTA ATAAACTGGA TGTTTCCTAT ACGGTTATCC GTGCGCCATA TGACGGGAAA ATGGGACGCC GTACTATCCA GGAAGGACAA TTGATCCAGG CTGGACAAAC GCTTGCATTT ATCGTTAACC AGGCTACCGG AAAATGGATC ATTGCCAACT TCAAAGAAAC ACAGGTCAGT CATATGCATA TCGGACAGAC GGCCGATATT GAGATTGACG CTTTTCCCGG TAAGACCTTC AACGGTACGA TAGAATCCTT ATCACCCGCT ACAGGTTCAA GGTTTTCATT ATTACCTCCC GATAACTCAT CAGGCAACTT CGTGAAAATC GTACAACGTA TTCCTGTACG TATTAAACTC ACCAGCAACG TAACTGAAAC AGCTTTACTC CGTGCCGGTA TGAATGCGAC TGTAGCAATC AGTAAGAAAA ATGGCTAA
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Protein sequence | MTAKKNNHAR TDRLITTITG WAAGVILIAL AIWGISTLFE LRKYEETNDA QVEEYINPVT ARVTGYISRI NYEENQDVKK GDTLLIIDDS EYQLQQQEAN AALLNAQAQV QVLESNVNTT AKNANVTEAQ IAAAKAKLWK QQQEYDRYQK LYDAESATKQ QLENVETALN VAKADYQTVI NNYDAAVSKI NDIKSQKAVL AAEIERRQAM LGRNKLDVSY TVIRAPYDGK MGRRTIQEGQ LIQAGQTLAF IVNQATGKWI IANFKETQVS HMHIGQTADI EIDAFPGKTF NGTIESLSPA TGSRFSLLPP DNSSGNFVKI VQRIPVRIKL TSNVTETALL RAGMNATVAI SKKNG
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