Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1750 |
Symbol | |
ID | 8357900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 2119885 |
End bp | 2122284 |
Gene Length | 2400 bp |
Protein Length | 799 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644963937 |
Product | glycoside hydrolase family 2 sugar binding |
Protein accession | YP_003121447 |
Protein GI | 256420794 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.266085 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCTGA TTAAGACTGC TAGTGTATGT TTATTAAGTG TCGTGCTTGG TCAGGGCGTT ATGGCGCAGA CCGGCTGGAA AGCACAGTCC TCAACAATCA AAACCCGTTG GGCACAGGAA GTATCCCCAA CCAATGTCCT CCCGGAGTAC CCTCGCCCAC AGATGGTGCG TGAGAACTGG CAAAACCTGA ATGGCCTGTG GCAATATACC ATTACCCCCA AAGACGCCGC CATGCCATCC GCCTTTGCGG ATCAGATACT CGTGCCGTTT CCGCTGGAAT CTGCACTTTC AGGCGTAAAA AAGCCGCTGC TGCCTACACA ACACCTCTGG TACAAGCGCA CATTTGTACA AACGCCTCTG AAAAACGGCG AACACGTGTT ATTACATTTC GGCGCCGTAG ACTGGCAGGC GACTGTCTAT GTAAACGGTA AAGAAACAGG TACACACGCT GGCGGTTATC AGTCTTTCTC ACAGGATATT ACCGCTGCCC TGAAAGACGG AGAAAATGAA ATTGTAGTAA AGGTTTATGA CCCTACCAGT GAAGGCATTG GCCCTCACGG TAAACAGGTA CTGAACCCGG CTAATATCTA TTATACACCT TCTTCCGGTA TCTGGCAGAC CGTCTGGATG GAAACAGTGC CTGCAGCCTA TATCGCAGGA CTGACCCTTA CTCCCGACGT AGACAAAAAC GTCCTGAACG TGAGCGTAAA CGCGCCGGCA GGTACTAATG TAGAACTGAT CGCCACTGAT AACGGCACAG AAGTCAGCAA AATAAAAGGC AAAGCAGGCG TACCATTGAA ACTGCCTGTG AAGAACGCGA AACTGTGGTC TCCTGCCAGC CCTTTCCTGT ATGATCTCAC CGTAAAACTC AGCAAAGGCG GCAAAACAGT TGATGAAGTA AAAAGCTACT TCGGGATGCG TAAAATCGCC ATTCAGAAAG ATGAAAAAGG CGTTGACCGC ATCTTCCTGA ATAACAAACC ATACTTCAAT CTGGGTACCC TGGATCAGGG TTTCTGGCCT GACGGACTGT ACACCGCCCC TACCGATAAT GCGCTGAAAT TTGATATTGA AGCCATTAAA GCAATGGGTT TTAATACCAT CCGTAAACAT ATCAAGGTTG AACCAGCCCG CTGGTATTAT CATACAGACA AACTGGGGAT GCTGGTATGG CAGGATTTCG TGAATCCTAA CCAGGGATTA CCGGAAGGCG CTAAAGCGGA GTATGAGAAA GAAACCAAAG AAACGCTGGA ACAACTGCAT AATTACCCTT CTATCACTAC CTGGGTAATC TTTAATGAGA AATGGGGTGC CTATGATCAG CAGCGTATCA CTGAATGGGT GAAAAGCGCG GATCCTTCCC GTATCGTAAA TGGTCACTCC GGTGAAATGC TGTATGTAAA TGAACAACTG CGCAGCCCGT CTCCGAATGC ATGGGTAAGT GCAGATATGA CCGACGTACA CTCCTACCCT GACCCGATGA ACGCACCCGC AGAACCAGGT AAAGCAAGGG TATTGGGTGA GTTTGGCGGT ATCGGTGTAT TCATTCCTGA ACACCAATGG AATACCGGCA GCGCCTGGGG ATATATACAG GAAAAACCAG CTGCACTGGC GGCTAAATAT AACATCATGA ACCAGCACCT GAAACTGCTG GAAGCAGATG GCTTGTCCGG CTCAATCTAT ACACAGCCTT TTGATGTGGA AGGTGAGCAG AACGGCTTAT TAACGTACGA CCGTGAAGTG GTTAAAATCC CGTTTGAGCA GATGCGTAGT ATCCATGCAT CACTGAACCC TGATCTGGGT ACTGTACCAC AGGTAACCGC CATGAATGCA GACCTGACCG ACCCGATCGT CGCCTACAGT AAAATGCTGC AGGAATACGT AGGGGGCCGC CGCGATGCCT CATTCCTCTT CAAGCTCGCT ATGATGGCAA AACAGGCTGG CGATAAAGAA GGCGCTAACC TGGCCGGCAG TGCCTATATT GCCTCATTAC ACGCTCCTTA TACGCCTGAA CAGCTGGATC TGATCCTTCA GTTCACCAAC AGTACAAAAG ACAAAGGTTT TGCTGTATTA CAGCAACAAT TGCAATCCAG CAATCCTCAG TTAGAGAAAA GACCGGTGAC TGTGAAACTG ATGAATATCG TATTCAAAGA CGTGATCGAC CCTGTATTGC AGAAGAGTGC AGATCCTGAC TGGTCAGCTA TTGCCAACAG CATTAAACCT TATGGCGATC CGGGTGACGA GATCTATCTG CGTGCCAAAA CCGTGTATAC TTTCAATAAA CAGGACTGGT CTAACTATGC TTCCGCAGCA AATACCTACC TGGAAAAATA CGGACAGAAC ATTCCTGAAC AGGAAAGAAA TATGTTCCGT CAGGCTATTG ACAACAATAA GAACCAATAA
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Protein sequence | MNLIKTASVC LLSVVLGQGV MAQTGWKAQS STIKTRWAQE VSPTNVLPEY PRPQMVRENW QNLNGLWQYT ITPKDAAMPS AFADQILVPF PLESALSGVK KPLLPTQHLW YKRTFVQTPL KNGEHVLLHF GAVDWQATVY VNGKETGTHA GGYQSFSQDI TAALKDGENE IVVKVYDPTS EGIGPHGKQV LNPANIYYTP SSGIWQTVWM ETVPAAYIAG LTLTPDVDKN VLNVSVNAPA GTNVELIATD NGTEVSKIKG KAGVPLKLPV KNAKLWSPAS PFLYDLTVKL SKGGKTVDEV KSYFGMRKIA IQKDEKGVDR IFLNNKPYFN LGTLDQGFWP DGLYTAPTDN ALKFDIEAIK AMGFNTIRKH IKVEPARWYY HTDKLGMLVW QDFVNPNQGL PEGAKAEYEK ETKETLEQLH NYPSITTWVI FNEKWGAYDQ QRITEWVKSA DPSRIVNGHS GEMLYVNEQL RSPSPNAWVS ADMTDVHSYP DPMNAPAEPG KARVLGEFGG IGVFIPEHQW NTGSAWGYIQ EKPAALAAKY NIMNQHLKLL EADGLSGSIY TQPFDVEGEQ NGLLTYDREV VKIPFEQMRS IHASLNPDLG TVPQVTAMNA DLTDPIVAYS KMLQEYVGGR RDASFLFKLA MMAKQAGDKE GANLAGSAYI ASLHAPYTPE QLDLILQFTN STKDKGFAVL QQQLQSSNPQ LEKRPVTVKL MNIVFKDVID PVLQKSADPD WSAIANSIKP YGDPGDEIYL RAKTVYTFNK QDWSNYASAA NTYLEKYGQN IPEQERNMFR QAIDNNKNQ
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