Gene Cpin_1726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1726 
Symbol 
ID8357876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2076002 
End bp2077450 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content46% 
IMG OID644963913 
Producthypothetical protein 
Protein accessionYP_003121423 
Protein GI256420770 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0702] Predicted nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATATAC TGCTTACAGG CGCAAATGGC TACATAGGTC AACGATTAAT TCCGGTATTA 
CTGGAACAGG GTCATCACAT TACCTGTTGT GTAAGAGATA AGGACAGGTT TAACCAGCAG
CATAACTATC CGGTAGATGT TATTGAGATT GACTTTCTGC AACCACAGGC GGCCACCTTT
CCCCGCGATA TTGACGTAGC CTATTACCTG GTACACTCCA TGAGCAGCGG TGGACAATTT
GAGGAAAAAG AAGCGGATTC TGCAAGAACA TTTGTGCGGC TGATCAGTGC TACAAATTGC
CAGCAGGTGA TCTATCTGAC CGGAATAGTC AATCAACAGG AGCTTTCCAG GCATCTTAGC
TCCCGGTTAA TGGTGGAGAA TATCCTGAAA GAAGGGCCTG TTCCGCTGAC AGCATTAAGG
GCAGGTATTA TTGTTGGCTC GGGAAGCGCC TCTTTTGAGA TCATCCGGGA CCTGGTAGAG
AAATTGCCCG TCATGGTCAC ACCGCGATGG CTGAACACCC GTTGTCAGCC TATCGGTATC
AGAGACGTCA TTTTCTTTTT ATGTGGTGTA TTGGGGAAAA AGGACACCTA TCACGCTAAT
TATGACATAG CGGGTCCGGA AGTACTTACT TATAAACAGC TATTACTGCA ATATGCAGCG
GTCAGGAAGC TGAAAAGATA TATTCTTACC CTACCTGTTA TGACGCCCCG GCTCTCTTCT
TACTGGCTTT ATTTCATTAC ATCTACCTCT TACAAACTTG CAGTCAATCT TGTTGACAGC
ATGAAAGTGG ATGTAACAGC GAGGCCGAAC CAACTTGCTG CAGATCTGGG CATACATTTA
CTCACTTACG AACAGGCTGT TGAGCTGGCA TTTGGCAAAA TAGAGCAGAA TCTTGTGACA
AGCAGCTGGA AAGATTCTTT TTCATCAGCT AACACACCTC AGACGTGGAT GGATAACATT
GAAGTGCCCA GTTTTGGTTG CCTGAAAGAT GAGCAGCAGA TTACCATTGA ACAGGATGAC
ACACTTGTCC TTAATAATAT CTGGAGGATA GGAGGCAATA ACGGCTGGTA CTATGCAAAC
ACGCTGTGGC GGATACGTGG TTTTCTCGAT AAACTTGCAG GAGGTGTAGG GCTGCGCAGA
GGCAGACGGG ATCCCATAGA TATACATGCG GGCGACGCCC TTGATTTCTG GCGGGTGCTG
GTTGCAGATA AGAAACAACG AAGACTTTTA TTATTTGCGG AAATGAAGCT TCCTGGAGAG
GCCTGGCTGG AATTTCAGAT AACGGAAAAA GACAATCAGT CTATACTAAG ACAAACTGCT
ACATTTCGCC CCCGAGGCTT ATGGGGCAGA CTCTACTGGT TTACAATGCT TCCTTTCCAT
TACTTTATTT TCGGAGGAAT GATCCGCCGG CTATCAAATG GAATTTTGGG TAAGACAAAA
AAAATGTAA
 
Protein sequence
MNILLTGANG YIGQRLIPVL LEQGHHITCC VRDKDRFNQQ HNYPVDVIEI DFLQPQAATF 
PRDIDVAYYL VHSMSSGGQF EEKEADSART FVRLISATNC QQVIYLTGIV NQQELSRHLS
SRLMVENILK EGPVPLTALR AGIIVGSGSA SFEIIRDLVE KLPVMVTPRW LNTRCQPIGI
RDVIFFLCGV LGKKDTYHAN YDIAGPEVLT YKQLLLQYAA VRKLKRYILT LPVMTPRLSS
YWLYFITSTS YKLAVNLVDS MKVDVTARPN QLAADLGIHL LTYEQAVELA FGKIEQNLVT
SSWKDSFSSA NTPQTWMDNI EVPSFGCLKD EQQITIEQDD TLVLNNIWRI GGNNGWYYAN
TLWRIRGFLD KLAGGVGLRR GRRDPIDIHA GDALDFWRVL VADKKQRRLL LFAEMKLPGE
AWLEFQITEK DNQSILRQTA TFRPRGLWGR LYWFTMLPFH YFIFGGMIRR LSNGILGKTK
KM