| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1711 |
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| Symbol | |
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| ID | 8357860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2055058 |
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| End bp | 2059353 |
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| Gene Length | 4296 bp |
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| Protein Length | 1431 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644963897 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003121408 |
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| Protein GI | 256420755 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.153332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATCA AGAAAGAAAA TCGTCCTAAA TCAAACTTTA GCAGCATTAC CATCAGTCTG
GCTTCTCCGG ATTCAATCCT GGAGCGCTCA TACGGGGAAG TGCTGAAGCC GGAAACCATC
AACTACCGTA CTTACAAGCC GGAGCGTGAT GGTTTATTCT GTGAAAGGAT CTTCGGCCCC
GTAAAGGACT ATGAGTGCTA TTGCGGAAAA TACAAACGTA TCCGTTATAA GGGTATCGTG
TGCGACCGTT GCGGTGTGGA GGTAACTGAG AAAAAAGTAC GTCGCGAAAG AATGGGTCAC
ATCCGTCTGG TTGTGCCTGT TGTTCACATC TGGTACTTCA AATCATTGCC AAATAAGATC
GGTTACCTGC TGGGTATGAG TTCTAAAAAA CTCGAAACCA TCGTTTACTA CGAAAGGTAC
GTGATCATAC AGGCAGGCGC TAAACAGGAG AAAGGCCTGA ACTACGGCGA TCTGTTAACT
GAAGAAGAAT ATCTTGATAT ACTGGATACC CTGCCGAAAG ACAACCAGCT GTTGCCTGAC
GAGGATCCAA ACAAGTTCAT TGCTAAAATG GGTGCTGAAG CGGTAGAAAT GATGCTGGCC
AGAATCGATC TGGATAGCCT TTCTTACCAG CTACGTAACC AGGCGGCAAC TGAAACCAGC
CAGCAACGTA AAGCGGAAGC GCTGAAACGT CTGAGCGTGG TGGAAGCTTT CCGTGAAGCA
AATGGTCGTG TTGAAAACCG TCCTGAATGG ATGGTAATGC AATACATCCC TGTAGTACCA
CCAGAACTGC GTCCGTTAGT TCCATTGGAT GGTGGCCGTT TCGCGTCTTC TGACCTGAAC
GACCTGTACC GCAGGGTGAT CATCCGTAAC AACCGTCTGA AACGTCTGAT CGAGATCAAG
GCGCCAGAAG TGATCTTACG TAACGAAAAA CGTATGCTGC AGGAAGCAGT TGACTCCCTC
TTCGATAACT CCCGTAAATC AAATGCGGTG AAAGCAGAAG GTGGTCGCGC ACTGAAATCC
CTGTCTGACG TACTGAAAGG TAAACAAGGT CGTTTCCGTC AGAACCTGTT AGGTAAACGT
GTGGACTACT CCGGTCGTTC CGTTATCGTG GTAGGTCCTG AACTGAAACT GCACGAGTGC
GGTCTGCCGA AAGATATGGC TGCTGAACTG TTCAAACCGT TCATCATCCG TAAACTGATC
GAAAGAGGTA TCGTGAAAAC GGTGAAATCA GCGAAAAAGC TGGTTGACAG AAAAGAAGCA
GTAGTTTGGG ATATCCTGGA AAACGTACTG AAAGGACACC CGGTAATGCT TAACCGTGCT
CCGACCCTGC ACCGTCTGTC TATTCAGGCA TTCCAGCCTA AACTGGTAGA AGGTAAAGCG
ATTCAGCTTC ACCCGCTGGT GTGTTCTGCG TTCAACGCCG ACTTTGACGG TGACCAGATG
GCTGTGCACG TACCGCTGAG CAATGCTGCG ATACTGGAAG CACAGTTGCT GATGCTGTCT
TCACATAACA TTCTTAACCC GCAGAACGGT ACGCCGATCA CCCTGCCTTC ACAGGACATG
GTCTTGGGTC TGTACTACAT CACCAAAGGC AAGAAATCTA CCCCTACTGA AAAAGTAGAA
GGTGAAGGTA AAGCCTTCTA TTCTGCGGAA GAAGTAATCA TCGCTTACAA CGAGCAGAGA
GTAAATCTGC ATGCGAACAT CCGCGTAAAA GCAAATGTTC GTGACGAGAA AGGTGAGCTG
GTGAATAAAC TGATCGAAAC AACCGTAGGT CGTGTAATCT TTAACCAGCA CGTTCCAAAA
GAAGCTGGTT ATGTGAACGC ACTGCTGACA AAGAAATCAC TGCGTGAAAT CATCGGTGAC
ATCATCAAGT ATACTGATAT CCCTAAAACT GCGAAGTTCC TGGATGATAT CAAACAGCTT
GGTTTCCGTA CAGCATTCCG TGGTGGTCTG TCCTTCAACA TCAATGACCT GATCATCCCA
GAGGTGAAAC AGCACATGAT CGATGGCGCT GCCAGCGAAG TTGACGAAGT ATGGGATAAC
TATAACATGG GTCTGATCAC GAATAACGAA CGTTATAACC AGATCATCGA TATCTGGTCT
CGTGTGGATA CCAAAGTAAC AGAAACGCTG ATCCGTGAAC TGGCAAATGA CAAACAGGGC
TTCAACTCTG TGTACATGAT GCTTGACTCC GGTGCGCGTG GTTCCAAACA GCAGATTAAA
CAGCTGGCTG GTCTGAGAGG TCTGATGGCT AAACCGCGTA AGAGTGGATC TACCGGTTCA
GAGATCATCG AAAACCCGAT CCTGTCTAAC TTTAAAGATG GTCTGAACGT ATTGGAATAC
TTCATCTCTA CGCACGGTGC CCGTAAGGGT CTTGCGGATA CGGCACTGAA AACGGCGGAT
GCAGGTTACC TGACCCGTCG TCTGGTGGAC GTTGCACAGG ATGTTGTAAT CAATGAAGAA
GATTGTGGTA CCCTGCGTGG TATTGCGACT TCCGCACTGA AAGATAATGA AGAGGTGGTT
GAGCCACTGT ATGACCGTAT CCTCGGCCGT ACTTCCCTGC ACGACGTATT CGATCCTCAT
ACAGAGGAAA TAATCGTTGA AGCAGGTGCT CAGATCACTG AAGATATCGC TCACCGTATC
GAAGACAGCG CGATCGATAC CGTTGAAATC CGTTCCGTAC TGACCTGCGA AAGCCGCAGA
GGTGTGTGCG TGAAATGTTA CGGTAAAAAC CTCGCTACGG GTTATATTAC CCAGCGTGGT
GATGCTGTAG GTATCATCGC TGCACAGTCC ATCGGTGAAC CTGGTACTCA GTTGACACTC
CGTACCTTCC ACGTAGGTGG TGTGGCTGGT TCTACATCTG TTGAAACCGG CTTACAGGCT
AAATTCGATG GTACTATTCA GTTCGACGGT CTGCGTACCA CTACATACGA AAACAACGAA
GGTGAAAAAG TTCAGGTGGT AATTGGCCGT ACCGGTGAGT TACGTATCGT GGACGTGAAA
AATGACAGAT TACTGATCAC TAACAACATT CCTTACGGTT CTACACTGCT GGTGAAAGAC
GGACAGAAAG TTGCAAAAGG TGACATGATC TGTACATGGG ATCCATACAA TGCCGTTATC
GTATCTGAAA TCGCTGGTAA CATCCGTTTC GATAGCATCA TCGAAGGTAT CACCTTCCGT
GAAGAGGCTG ACGAACAGAC TGGTCACCGT GAGAAAGTGG TTATCGAAAC CAAAGACAAG
AACAAGATCC CGTCTATCTA TGTAGATGGT AATAAAGAGG TGAAATCCTA CAACTTACCA
GTAGGTTCCC ACATCGTTAT CGAAGAAGGT GAAGCAGTAA GAGCTGGTCA GGTAATCGTG
AAGATCCCAC GTATCCTCGG TAAACTGAGA GATATCACGG GTGGTCTGCC ACGTGTAACT
GAACTGTTTG AAGCACGTAA CCCAAGCAAC CCTGCTATCG TATCTGAGAT TGATGGTGTG
GTAGCATTCG GTAACATCAA ACGTGGTAAC CGTGAGATTA TCATCGAAAG CCGTGAAGGT
CACATCAAGA AATACCTGGT GCCATTGACG CGTCACATCC TGGTACAGGA CGGTGACTTC
GTGAAAGCAG GTACTGCACT GTCTGACGGT TCTATCACTC CAGCTGACAT CCTGTCCATC
AAAGGACCGT TTGCAGTACA GGAATACCTG GTAAATGAGA TCCAGGAGGT ATACCGTTTA
CAGGGTGTGA AGATCAACGA CAAGCACATC GAGGTAATCG TACGTCAGAT GATGCGTAAA
GTGAACATCG AGGATCCGGG CGATACCCGC TTCCTGGAAG GTGACACTAC CGATAAATTC
GAATTCTTTG AAGAAAACGA TAACATCTTC GATAAGAAGG TAGTTACCGA AGCAGGTGAC
TCTGGTGTGC TGAAAGCTGG TCAGATCGTT ACCCTGCGTC AGGTAAGGGA AGAAAACTCC
CTGCTGCGCC GTGCAGATAA AAAACTGGTG GAATTCCGCG ATGCAAAACC GGCTACCTCC
AGCCCGCTGT TACAGGGTAT CACGAAAGCG TCCCTGGGTA CTCACAGCTG GATCTCTGCC
GCATCCTTCC AGGAAACAAC CAAAGTACTG TCTTCTGCTG CCATCAACGG TAAGATCGAT
GACATGCTTG GCCTGAAAGA GAATGTGATC ACCGGTCACC TGATCCCTGC AGGTACTGGT
CTGCGTGAGT TCGAAAACAT GATCGTAGGT TCCAAAGAAG AATACGACAT CCTGGCCTCT
TCTAAAGAAG TGTTCCAGTT TGACGAAGAA GAATAG
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| Protein sequence | MAIKKENRPK SNFSSITISL ASPDSILERS YGEVLKPETI NYRTYKPERD GLFCERIFGP
VKDYECYCGK YKRIRYKGIV CDRCGVEVTE KKVRRERMGH IRLVVPVVHI WYFKSLPNKI
GYLLGMSSKK LETIVYYERY VIIQAGAKQE KGLNYGDLLT EEEYLDILDT LPKDNQLLPD
EDPNKFIAKM GAEAVEMMLA RIDLDSLSYQ LRNQAATETS QQRKAEALKR LSVVEAFREA
NGRVENRPEW MVMQYIPVVP PELRPLVPLD GGRFASSDLN DLYRRVIIRN NRLKRLIEIK
APEVILRNEK RMLQEAVDSL FDNSRKSNAV KAEGGRALKS LSDVLKGKQG RFRQNLLGKR
VDYSGRSVIV VGPELKLHEC GLPKDMAAEL FKPFIIRKLI ERGIVKTVKS AKKLVDRKEA
VVWDILENVL KGHPVMLNRA PTLHRLSIQA FQPKLVEGKA IQLHPLVCSA FNADFDGDQM
AVHVPLSNAA ILEAQLLMLS SHNILNPQNG TPITLPSQDM VLGLYYITKG KKSTPTEKVE
GEGKAFYSAE EVIIAYNEQR VNLHANIRVK ANVRDEKGEL VNKLIETTVG RVIFNQHVPK
EAGYVNALLT KKSLREIIGD IIKYTDIPKT AKFLDDIKQL GFRTAFRGGL SFNINDLIIP
EVKQHMIDGA ASEVDEVWDN YNMGLITNNE RYNQIIDIWS RVDTKVTETL IRELANDKQG
FNSVYMMLDS GARGSKQQIK QLAGLRGLMA KPRKSGSTGS EIIENPILSN FKDGLNVLEY
FISTHGARKG LADTALKTAD AGYLTRRLVD VAQDVVINEE DCGTLRGIAT SALKDNEEVV
EPLYDRILGR TSLHDVFDPH TEEIIVEAGA QITEDIAHRI EDSAIDTVEI RSVLTCESRR
GVCVKCYGKN LATGYITQRG DAVGIIAAQS IGEPGTQLTL RTFHVGGVAG STSVETGLQA
KFDGTIQFDG LRTTTYENNE GEKVQVVIGR TGELRIVDVK NDRLLITNNI PYGSTLLVKD
GQKVAKGDMI CTWDPYNAVI VSEIAGNIRF DSIIEGITFR EEADEQTGHR EKVVIETKDK
NKIPSIYVDG NKEVKSYNLP VGSHIVIEEG EAVRAGQVIV KIPRILGKLR DITGGLPRVT
ELFEARNPSN PAIVSEIDGV VAFGNIKRGN REIIIESREG HIKKYLVPLT RHILVQDGDF
VKAGTALSDG SITPADILSI KGPFAVQEYL VNEIQEVYRL QGVKINDKHI EVIVRQMMRK
VNIEDPGDTR FLEGDTTDKF EFFEENDNIF DKKVVTEAGD SGVLKAGQIV TLRQVREENS
LLRRADKKLV EFRDAKPATS SPLLQGITKA SLGTHSWISA ASFQETTKVL SSAAINGKID
DMLGLKENVI TGHLIPAGTG LREFENMIVG SKEEYDILAS SKEVFQFDEE E
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