Gene Cpin_1671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1671 
Symbol 
ID8357813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp2015751 
End bp2016485 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content47% 
IMG OID644963851 
ProductShikimate dehydrogenase substrate binding domain protein 
Protein accessionYP_003121368 
Protein GI256420715 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTTT ATGGTCTTAT TGGATATCCG CTGAGTCATT CATTCTCCAA AGGCTTTTTC 
GCCGAGAAGT TTGCACGCGA AGGCATCAAG GAATGCATGT ATGATAGTTT TCCGATCCCA
ACCATCGGCG ACCTGCCTGC TTTACTGACA CAACAGCCGG GATTGCAGGG GCTCAATGTG
ACCATCCCTT ATAAGGAAGT TGTAATACCA TATCTTGATG AATTAAGTCC TGCTGCCGCT
AAAATGAAGG CAGTGAACTG TATCCGGTTT AAAGATGGCC GTAAGATAGG TTACAACACA
GACGCCATCG GATTCAGAAG ATCCCTTGAA CCTTTACTCC AACCACATCA TAATAAGGCA
TTGATACTGG GTACCGGCGG TGCAGCAAAA GCTGTACAGT ATGTACTCGA AAGTCTGAAT
ATACCGTATC AGCTGGTTAG CCGTCAGGCA TCTGCAGCAA CCATCAGCTA TGAACAACTG
GATGCCGCCA CAATGGCTTC ACATACGCTG ATCGTCAACA CCACGCCACT GGGTATGTAC
CCTAACCTGG AAGCAGCGCC CGCTATACCT TATGAACTGC TCACAGCCGA TCACCTGTTA
TATGATCTGA TCTATAATCC CGCTGTTACT GCCTTTTTAC AAAAAGGAGC CGACAAAGGA
GCCACGATCA AAAATGGGCA TGAGATGCTG ATCCTGCAGG CAGAAGCCAG CTGGGAAATC
TGGAACGAAC AATAA
 
Protein sequence
MKVYGLIGYP LSHSFSKGFF AEKFAREGIK ECMYDSFPIP TIGDLPALLT QQPGLQGLNV 
TIPYKEVVIP YLDELSPAAA KMKAVNCIRF KDGRKIGYNT DAIGFRRSLE PLLQPHHNKA
LILGTGGAAK AVQYVLESLN IPYQLVSRQA SAATISYEQL DAATMASHTL IVNTTPLGMY
PNLEAAPAIP YELLTADHLL YDLIYNPAVT AFLQKGADKG ATIKNGHEML ILQAEASWEI
WNEQ