Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1671 |
Symbol | |
ID | 8357813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2015751 |
End bp | 2016485 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644963851 |
Product | Shikimate dehydrogenase substrate binding domain protein |
Protein accession | YP_003121368 |
Protein GI | 256420715 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGTTT ATGGTCTTAT TGGATATCCG CTGAGTCATT CATTCTCCAA AGGCTTTTTC GCCGAGAAGT TTGCACGCGA AGGCATCAAG GAATGCATGT ATGATAGTTT TCCGATCCCA ACCATCGGCG ACCTGCCTGC TTTACTGACA CAACAGCCGG GATTGCAGGG GCTCAATGTG ACCATCCCTT ATAAGGAAGT TGTAATACCA TATCTTGATG AATTAAGTCC TGCTGCCGCT AAAATGAAGG CAGTGAACTG TATCCGGTTT AAAGATGGCC GTAAGATAGG TTACAACACA GACGCCATCG GATTCAGAAG ATCCCTTGAA CCTTTACTCC AACCACATCA TAATAAGGCA TTGATACTGG GTACCGGCGG TGCAGCAAAA GCTGTACAGT ATGTACTCGA AAGTCTGAAT ATACCGTATC AGCTGGTTAG CCGTCAGGCA TCTGCAGCAA CCATCAGCTA TGAACAACTG GATGCCGCCA CAATGGCTTC ACATACGCTG ATCGTCAACA CCACGCCACT GGGTATGTAC CCTAACCTGG AAGCAGCGCC CGCTATACCT TATGAACTGC TCACAGCCGA TCACCTGTTA TATGATCTGA TCTATAATCC CGCTGTTACT GCCTTTTTAC AAAAAGGAGC CGACAAAGGA GCCACGATCA AAAATGGGCA TGAGATGCTG ATCCTGCAGG CAGAAGCCAG CTGGGAAATC TGGAACGAAC AATAA
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Protein sequence | MKVYGLIGYP LSHSFSKGFF AEKFAREGIK ECMYDSFPIP TIGDLPALLT QQPGLQGLNV TIPYKEVVIP YLDELSPAAA KMKAVNCIRF KDGRKIGYNT DAIGFRRSLE PLLQPHHNKA LILGTGGAAK AVQYVLESLN IPYQLVSRQA SAATISYEQL DAATMASHTL IVNTTPLGMY PNLEAAPAIP YELLTADHLL YDLIYNPAVT AFLQKGADKG ATIKNGHEML ILQAEASWEI WNEQ
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