| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1669 |
|---|
| Symbol | |
|---|
| ID | 8357811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2013262 |
|---|
| End bp | 2014692 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963849 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003121366 |
|---|
| Protein GI | 256420713 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.42993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAG ACTTTCCATT TTTAAACGAC GATTTTGAGG AGTTAAAAGA CTTGTTGCAG
CAGTTTGAAA ACCTGAAAGC AGGCACGTCT CACTCCTTTC TCGACGAGGA TTCTTTCGAA
CTGATCATAG ACTATTATGA TGAGCATGAT GAACTTCCTA ATGCCATGCA GGCTGCTGAG
ATGGCGATAG AGCAGTTTCC CTATTCTTCT ACTCTCTTAC TGAAAAAGGC TAATCTACTT
ATAGAATCGA AGAAATACCA GGAGGCCATG GATCTGCTGG AAAAAGCTTC CATATTGGAT
AGTACCGATA TTAACCTGTA CATCCTCCAG ACTGATGTAT ATCTTGCGAT GAACCAGCAC
GAAAAGGCCG CGGCCCTGCT GGAAGAACAG ATAGCTGTTT TTGAAGGAGA CGATAAGACG
GAACTGCTGC TTGAACTGGC AGACGTATAT GATGACTGCG AAGAGTTCGA AAAGGTATTC
GACTGCCTCA GACTGGCACT TGAGCACGCT CCCAATAACG AAGAGGCCTT GCATAAGATC
TGTTTCTGGA CCGAATTTAC CGGCCGGAAC GAAGAAAGCA TCCGCCTTCA CACCAATATC
ATTAACGAAC ACCCCTACAA TCAGCTGGCC TGGTTTAACC TGGGTACCGC CTATCAGGGG
CTTAAATTGT ACGAGAAAGC AATCGATGCC TATCAGTACG CCATCGTTAT TGACGAAAAA
TTTGATTACG CGTACCGTAA TATGGGCGAT GCTTACATCC GCTTACGCAA ATATGCCGAA
GCAATCGACG TGCTGAAAAA ACACCTCGAA ATTGCGAAAC CGGAGGACGT CATCTATGAG
GCAATCGGTC ACTGTTACGA ACGCCAGCGT AAATACACAC AGGCCCGCTA TTACTACCGT
AAGGCATCCC ATCTCAGTCC GGGCGACGAT AAGCTGTACT ACAAGATCGG TATCGCTTAT
ATGACAGAAG CCAACTGGGA AAACGCGATC AAGTCCATCA TGAGCGCTAT TAAAATCAAT
AAAAACAGCG CCGAATACCT GATCGCCCTT GGTCAGTGTT ATATTGAACT TGAAAAGAAC
AAAGAAGGCC TGATTCACCT GCTGGCCGCC GTACGCATCC GTCCTTCCAG TATCACCACC
TGGCAGGAAT TTATCCGCGG ACTCTACATT TCCGGTTTCT ATGACGAAGC CCTGATCCAG
CTGGATGCAG CTATTCAGAA AGTTGGTCAC AAACCGGTAT TGCAGTACTA CCTGGCAGGT
ATCATGTTCG CTACCGGTAA GTCTAAAGAA GGTATGCTGC AACTGGAAAC AGCCCTGCAG
ATGAATGTAA AACATGTCAA GAAACTCATA GAACTTGACC CGACTTTACT CCAGCATCCC
GGTATCGTAG AGCTCATTAC CAGGTATAAA AAGACCAAAA AAAACAAGTA A
|
|---|
| Protein sequence | MNQDFPFLND DFEELKDLLQ QFENLKAGTS HSFLDEDSFE LIIDYYDEHD ELPNAMQAAE
MAIEQFPYSS TLLLKKANLL IESKKYQEAM DLLEKASILD STDINLYILQ TDVYLAMNQH
EKAAALLEEQ IAVFEGDDKT ELLLELADVY DDCEEFEKVF DCLRLALEHA PNNEEALHKI
CFWTEFTGRN EESIRLHTNI INEHPYNQLA WFNLGTAYQG LKLYEKAIDA YQYAIVIDEK
FDYAYRNMGD AYIRLRKYAE AIDVLKKHLE IAKPEDVIYE AIGHCYERQR KYTQARYYYR
KASHLSPGDD KLYYKIGIAY MTEANWENAI KSIMSAIKIN KNSAEYLIAL GQCYIELEKN
KEGLIHLLAA VRIRPSSITT WQEFIRGLYI SGFYDEALIQ LDAAIQKVGH KPVLQYYLAG
IMFATGKSKE GMLQLETALQ MNVKHVKKLI ELDPTLLQHP GIVELITRYK KTKKNK
|
|---|
| |