Gene Cpin_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1616 
Symbol 
ID8357758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1964885 
End bp1965523 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content43% 
IMG OID644963796 
Productribosomal protein L4/L1e 
Protein accessionYP_003121313 
Protein GI256420660 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGTTG ATATTTTAAA TAAAGAAGGT AAGAAAACCG GCAGGACTAT TGAGCTTCCT 
GAGGAGATTT TCGGTGTGGA GCCTAATAAC CACGTTATTT ACCTGGCAGT AAAACAGTAT
CTGGCCGCTC AGCGTCAGGG TACTCACAAG GTTAAGACCA GAGCTGAAGT GAAAGGTGCT
TCCCGCAAGC TGCACAAACA AAAAGGTACT GGTGGTTCCC GTAAAGGTAA CATCCGTAAC
CCACTGTATA AAGGTGGTGG TACCATCTTC GGTCCTAAGC CACATAAATA TGACATCAAG
CTGAACAGAA AAGTGAAAGA TCTCGCAAAG ATCTCCGCTC TGTCTACTAA AGCTAAAGAG
AACAGCATCA TCGTTGTTGA AGATCTGACA CTGGATACAC CAAAAACCAA AGCGTTTGCA
GGTATCCTGA ACAATCTGAA AGTAAACGTA TCAGGCCGTA AGACTTTATT CGTACTGCCA
GAGTATAACG ATAATGTTTA CCTGTCTCTG AGAAACATTC CTACTGTGGA TAGCGTGATG
TTGAGCGATA TCAACACTTA CGAAATCATG AACAGCAATG TTCTGGTGTT CACAGAGAGT
GCAGCTAAGA TCTTCACTGA AGAGCCAGTA GAAGCTTAA
 
Protein sequence
MQVDILNKEG KKTGRTIELP EEIFGVEPNN HVIYLAVKQY LAAQRQGTHK VKTRAEVKGA 
SRKLHKQKGT GGSRKGNIRN PLYKGGGTIF GPKPHKYDIK LNRKVKDLAK ISALSTKAKE
NSIIVVEDLT LDTPKTKAFA GILNNLKVNV SGRKTLFVLP EYNDNVYLSL RNIPTVDSVM
LSDINTYEIM NSNVLVFTES AAKIFTEEPV EA