Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1599 |
Symbol | |
ID | 8357741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1943460 |
End bp | 1946048 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644963779 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_003121296 |
Protein GI | 256420643 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTCC ATATCTTTCT GATCGCCCTT CTTGTCAGTG CAAACCTCTT CGCACAAAAT CAAAACCAAA CGGCTCCACC CAAGCCTATT GACAGCGCGA CACTCAGCAA AATCATTTCC CAACAGGTAA AAGATACTTC CGGCAAATCG GTTATCCGGT TATCAGATAC TTCTGTAGCA ATCATTATTA CACGGCTGGA AACCTATACC CTGATGCTCA ATCAGGTGAT GAGTACCCTA AGACGCGGAC TTGATACAGC GGAGATCAGT GAAAGTATTC CGCTGATCGA TTCGTCTATA AAGGTGGTAC AAAAAGACAT GACCGCTATC GGCAGTACTA ACAATGTACA TGACCTTTAT ACAAACCGTG TATTGCTGGT CCAGCTGGAA AGAAAACTGG ACAGCTGGCA GGATGTGCTG TTTAAGTTTC ACGACAGACT CGTAAATATC ACCGATACGC TGCAGTTACT GAGAAAAGAT ACCAGTATGC GTAATATCCC CGCTGAAGAC GAACTACGGG GTATTTACGT CGGACAAATG GCATCACTCA TCCAGAAATG GCGGCAGGTA GACAGTGCCA ATAAGACGAA TCTGTTGCAT CTGGGATTGT TGCAGAACAG GGTCGCCAAG CGTTATATTG ATGTGACCAA TCTGCTGGAG GATATGGATT ATCAGCTGAC TCGCTTCAGT CAGCGTATGT TTAATAAAGA CTTCAGTTAT CTGTGGGAGC CGCCCCTGCC AGGTAAAAAA GGACCAAAAT TCCCGGAAGT ACTGCATCGC TCTGTTCGCA AAAACCTTAA CATTCTCAAG ATATTCTTTG CTGTCAGCGG ACCTGTTTAC CTGATCTGGC TACTGGGTGC AGCGCTATTC TTATGGTGGG TAAAATTTAA CGCCCGGAAA ATTAAACGCA AACATGAAGA ACGGGAAGCA GAAACCATCC TGCAACATTC CCGTTACCTA TACCGTTACC CTATCGCCAG TACGATACTG CTTGCTTCCA CCCTTTCGTT TCTGATTTCT ATCCAATACC CGATATTCTA TTCCGGCATC TGCTGGATGA TTACAGCTAT TGCCACAACA ATTATTATTC GCAATAGCAT TCCTCTCAAT TTATTAAAGC GATGGTATTT GCTGGTATTC CTCCTGGCTT TGTACTGTGT CAATAACCTG TTGATACAGG TGACATTTTT TGAGCAATGG GGCATCTTCA TCGGTGGGAT ATTGGCCATT ATTCTTGGCG TCTATCTCTT ACGTACGCTG CGGAATACCA CATTGCCTTT GCCTAAATAC TCACGTTCTG CTATCTGGAC ATTTATCATA TTAAGCGGTC TTTCCGTCAT ACTTGTGTTA ATGGCGAGGG TAGCTGCCGC CAAGATCATG GGGGCTGCAA GTGTGGTCAG TATTACGATG GCGCTGGGTA TTGTGTTGAT GGTAGAAATA CTGATGGAAG CGATCTATAT ACAGGTGGAA GCCAAAAAGG ATTCCAGCAC CTTCATTTCC ATGATCGACT ATCAGAATAT CAAATCCCGT TTAAAGACAA TCTTCTATAT CGCTGCTTCT ATCGGCTGGC TGGCACTGCT AGCCCGTAAT CTTTACATGT ACGACGGACT ATCTGAGATG ATCAGTAACC TGCTGGTGGC CGAAAGAAAG ATTGGCAACT TTACATTCTC TTTCAGCAGT GTGATCATCT TCCTGCTGAT CATCTGGCTG TCTACTGTTG TGACACAGAT TCTCTCTTAT CTGTTGGGTT ATACCGGTCA GTCTTCGCAA CCACAGAAAA AACTGGGATC AGCGATGCTG TTGATACGCC TGGCGGTACT CGCAGCAGGC ACCTTGCTGG CATTTGCGGC CTCGGGGATA CCGATGGATA AACTCGCCAT TGTAATAGGT GCGCTGGGTG TAGGTATTGG TTTCGGTTTG CAGAACATTG TGAATAACCT GGTATCGGGT ATCATCCTGG CATTTGAAAA ACCGATAGAG GTGGGCGATG TGATAGAGTT AGGCAGCAGG TCAGGCGTAG TAAAGGAAAT TGGGATCCGT TCCAGTAAAA TTTCTGCCGG AGACGGATCG GAGGTGATCG TACCCAACGG CGACCTGATT GCACAACAAC TGGTAAACTG GACACTAACC AGCAGAACAC GTCGTGTAGA CGTAGTAGTA GGCGTCGCTT ATGGTAGTGA CCTGAAGAAG GCGCTGACCG TTATTAAAGA ATACCTGGTG AACCAGGAGG ATATTCTGAA AACACCGGAT CCGACGGTGT TATTGCAGAA CTTCCGGGAT ACGGGTGTAG ATATACAGGC GATGTTCTGG ATCAGTGATC TTGGGCAGGC AGGTGTGACG AAAAGTGAAG TGCTCACGGA TATCTATATC AAATTACAGG AAGCGGGTAT CAGTATCGCC TATCCGAGAC CGCAGCAATT CCAGTTTAAT ATGGAGCCAG GTATCTGGAA ACAGCAACCG GCACCGACAC CAGCTACACC TTCTGCACCA ATAGCAGCGG TGACGCCGAC ACCTGCGGGA ACTCCGCCGG GAACTGGTGG TAACGGAGAA AGACCTGCTG CACCGGAAAA CCCCGCTCCT AATCCATAG
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Protein sequence | MRLHIFLIAL LVSANLFAQN QNQTAPPKPI DSATLSKIIS QQVKDTSGKS VIRLSDTSVA IIITRLETYT LMLNQVMSTL RRGLDTAEIS ESIPLIDSSI KVVQKDMTAI GSTNNVHDLY TNRVLLVQLE RKLDSWQDVL FKFHDRLVNI TDTLQLLRKD TSMRNIPAED ELRGIYVGQM ASLIQKWRQV DSANKTNLLH LGLLQNRVAK RYIDVTNLLE DMDYQLTRFS QRMFNKDFSY LWEPPLPGKK GPKFPEVLHR SVRKNLNILK IFFAVSGPVY LIWLLGAALF LWWVKFNARK IKRKHEEREA ETILQHSRYL YRYPIASTIL LASTLSFLIS IQYPIFYSGI CWMITAIATT IIIRNSIPLN LLKRWYLLVF LLALYCVNNL LIQVTFFEQW GIFIGGILAI ILGVYLLRTL RNTTLPLPKY SRSAIWTFII LSGLSVILVL MARVAAAKIM GAASVVSITM ALGIVLMVEI LMEAIYIQVE AKKDSSTFIS MIDYQNIKSR LKTIFYIAAS IGWLALLARN LYMYDGLSEM ISNLLVAERK IGNFTFSFSS VIIFLLIIWL STVVTQILSY LLGYTGQSSQ PQKKLGSAML LIRLAVLAAG TLLAFAASGI PMDKLAIVIG ALGVGIGFGL QNIVNNLVSG IILAFEKPIE VGDVIELGSR SGVVKEIGIR SSKISAGDGS EVIVPNGDLI AQQLVNWTLT SRTRRVDVVV GVAYGSDLKK ALTVIKEYLV NQEDILKTPD PTVLLQNFRD TGVDIQAMFW ISDLGQAGVT KSEVLTDIYI KLQEAGISIA YPRPQQFQFN MEPGIWKQQP APTPATPSAP IAAVTPTPAG TPPGTGGNGE RPAAPENPAP NP
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