Gene Cpin_1557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1557 
Symbol 
ID8357699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1901077 
End bp1901898 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content41% 
IMG OID644963737 
Productputative signal transduction histidine kinase 
Protein accessionYP_003121254 
Protein GI256420601 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACCT CAACATTCGC AACCTCTCTG ACCATCATCA TATCAACTCT GCTTGTTATG 
AGTCTCAGTG CGGCCGTTAT TTATTTCCTG TTTCTTTATC AGAAGAAAAA ATTCCGACAT
CAACAGGAAC TGATTGAAAT GCGGGAGGCA TTTAACCATG TCTTACTTCA GTCAAAGCTT
GCGATACAGG AGCAAACGCT TAACCATATA TCAAAAGAGT TACACGCCAA CTTTAGTCAC
CTGGTGTCCC TGATTAACAT TAATCTTTCT GAAATATTGC CCAAAAGTCC GGCAGGACAA
AGGGAGAATA TCCTTGAAAC AAAATCACTG GCTAAACAGC TTATGAGCGA ACTAAAGGCG
CTCAGTGCCA ATCTCAATAC CGATCATATC ATTCATATAG GATTTGTACA GGCATTACAA
AATGAGCTGA ACAGACTTGC GAAGACCGGC AGATATGATG TCAGTATTAC AAAAACCGGA
GAAGAATACC GGATGCAGCC AGAGCATGAA ATCATCCTCT TCCGCCTCTG TCAGGAGGTA
CTCAATAACG TAGTGAAATA TGCGAGAGCA TCCAAAGTAA TTTCGAAACT CTCCTTTTCA
AATGATAATT TCATTCTGAC TATTGCCGAC AATGGCGACG GATTTGACAT TGATCAGGCG
CTTCAGCAAA GCGGAGAAAA ACAAAGCACC GGTTTGCTGA ATATGCGTAA AAGAGCATCG
CTTATTAATG CTGATCTGAA TATTACAAGT CACAGCGGAG ACGGCACTAT CGTTACCATT
AATATTCCCC ATCCTCAAAT ACTAAAAACT TATGCTGTAT GA
 
Protein sequence
MQTSTFATSL TIIISTLLVM SLSAAVIYFL FLYQKKKFRH QQELIEMREA FNHVLLQSKL 
AIQEQTLNHI SKELHANFSH LVSLININLS EILPKSPAGQ RENILETKSL AKQLMSELKA
LSANLNTDHI IHIGFVQALQ NELNRLAKTG RYDVSITKTG EEYRMQPEHE IILFRLCQEV
LNNVVKYARA SKVISKLSFS NDNFILTIAD NGDGFDIDQA LQQSGEKQST GLLNMRKRAS
LINADLNITS HSGDGTIVTI NIPHPQILKT YAV