Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1469 |
Symbol | |
ID | 8357610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1802135 |
End bp | 1803454 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644963649 |
Product | NHL repeat containing protein |
Protein accession | YP_003121167 |
Protein GI | 256420514 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAAAT GTTTACTACC CGCAGCCATT GTATTGTTAT TATTTGCTGC CTGTCACAAC CAGCCTTCTG CCAGTCAGTC ATCCGCTGAC AGTACTGCCA ACACAGACAC GACTGCTGCT GCCGGCTCTT TACCTGCGCC TTATGCAACA AAGTCCGTCA ATAATTACAG CAATGTAATG GGCTGGCATG ATGGTAAAAC ACCGCTGGCG CCCGGTGGAC TAACCGTATC CGCACTGGCC ACAGACCTAA AAAATCCCCG CTGGATCTAC GTGATGCCCA ATGGCGATAT TCTTGTTGCA GAATCCAGCT CCAAATCAGA TGTAGGCAAT AAGGTCAAAG ATGTAGTGAG CGGCAGAGCT GGTTCGGGGA ATTTCGGCAA CAGTGCAGAC CGTATTACCT TATTGAGGGA TGCAGACCGT GATGGTAAAC CTGAACTGCG TACTATTTTC CTGCAGGACT TAAATCAACC TTTCGGTATG CTCCTGCTGG ATAAAACATT CTATGTCGCC AATACAGACG GCATCCTGCA ATTCCCTTAT AAAACGGGCG ACACCGTCAT TACTGCAAAA GGCAAAAAGA TACTCGATCT CCCGGCCGGT GGTTATAACA ATCACTGGAC GCGCAATATC ATCTCCAATG CTGCAGGCAA TAAGATATAC GTGAGCGTTG GTTCCGGTAG TAACAACGCG GAACATGGTA TGGAAAACGA ACACAGACGT GCAGGTATCC TGGAGATCAA TCCGGATGGC AGTGGAGAAA AAATATACGC CAGCGGACTT CGTAATCCTG TTGGTATGGA CTGGGCGCCT GGTACCAAAA CACTATGGAC CGCCGTCAAT GAAAGAGATG GTCTGGGCGA TGACCTGGTA CCCGATTATA TGACCAGTGT AAAAGAAGGT GGCTTTTATG GATGGCCTTA TGCTTACTGG GGCAAAAATC CGGATCCGAG AATGGAAGAT AAGCAACAAC CCGAACTTGT TGAAAAGACG ATCGTACCAG ATCTCTCATT AGGTGCTCAT ACCGCCTCTC TGGGACTTAT CTTTTATAAA GGCAAGGCAT TGCCTGAAAA ATACAGAAAC GGGGCTTTTA TAGGGCAACA CGGCTCATGG AACCGTTCAA CACTTTCCGG CTATAAAGTA GTCTTCGTTC CTTTTCAAAA CGGGAAACCG GCTGGTAGTC CGGAGGACTT CCTCACCGGA TTCATGGCGG ATGCGGATAA AAGCGAAGTA TACGGCCGTC CCGTAGGTGT AGCAGTTGCA GCAGATGGCG CACTGCTCGT TGCGGATGAT GCCGGTAATA CCATTTGGCA GGTCAAATAG
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Protein sequence | MRKCLLPAAI VLLLFAACHN QPSASQSSAD STANTDTTAA AGSLPAPYAT KSVNNYSNVM GWHDGKTPLA PGGLTVSALA TDLKNPRWIY VMPNGDILVA ESSSKSDVGN KVKDVVSGRA GSGNFGNSAD RITLLRDADR DGKPELRTIF LQDLNQPFGM LLLDKTFYVA NTDGILQFPY KTGDTVITAK GKKILDLPAG GYNNHWTRNI ISNAAGNKIY VSVGSGSNNA EHGMENEHRR AGILEINPDG SGEKIYASGL RNPVGMDWAP GTKTLWTAVN ERDGLGDDLV PDYMTSVKEG GFYGWPYAYW GKNPDPRMED KQQPELVEKT IVPDLSLGAH TASLGLIFYK GKALPEKYRN GAFIGQHGSW NRSTLSGYKV VFVPFQNGKP AGSPEDFLTG FMADADKSEV YGRPVGVAVA ADGALLVADD AGNTIWQVK
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