Gene Cpin_1469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1469 
Symbol 
ID8357610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1802135 
End bp1803454 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content49% 
IMG OID644963649 
ProductNHL repeat containing protein 
Protein accessionYP_003121167 
Protein GI256420514 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2133] Glucose/sorbosone dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAT GTTTACTACC CGCAGCCATT GTATTGTTAT TATTTGCTGC CTGTCACAAC 
CAGCCTTCTG CCAGTCAGTC ATCCGCTGAC AGTACTGCCA ACACAGACAC GACTGCTGCT
GCCGGCTCTT TACCTGCGCC TTATGCAACA AAGTCCGTCA ATAATTACAG CAATGTAATG
GGCTGGCATG ATGGTAAAAC ACCGCTGGCG CCCGGTGGAC TAACCGTATC CGCACTGGCC
ACAGACCTAA AAAATCCCCG CTGGATCTAC GTGATGCCCA ATGGCGATAT TCTTGTTGCA
GAATCCAGCT CCAAATCAGA TGTAGGCAAT AAGGTCAAAG ATGTAGTGAG CGGCAGAGCT
GGTTCGGGGA ATTTCGGCAA CAGTGCAGAC CGTATTACCT TATTGAGGGA TGCAGACCGT
GATGGTAAAC CTGAACTGCG TACTATTTTC CTGCAGGACT TAAATCAACC TTTCGGTATG
CTCCTGCTGG ATAAAACATT CTATGTCGCC AATACAGACG GCATCCTGCA ATTCCCTTAT
AAAACGGGCG ACACCGTCAT TACTGCAAAA GGCAAAAAGA TACTCGATCT CCCGGCCGGT
GGTTATAACA ATCACTGGAC GCGCAATATC ATCTCCAATG CTGCAGGCAA TAAGATATAC
GTGAGCGTTG GTTCCGGTAG TAACAACGCG GAACATGGTA TGGAAAACGA ACACAGACGT
GCAGGTATCC TGGAGATCAA TCCGGATGGC AGTGGAGAAA AAATATACGC CAGCGGACTT
CGTAATCCTG TTGGTATGGA CTGGGCGCCT GGTACCAAAA CACTATGGAC CGCCGTCAAT
GAAAGAGATG GTCTGGGCGA TGACCTGGTA CCCGATTATA TGACCAGTGT AAAAGAAGGT
GGCTTTTATG GATGGCCTTA TGCTTACTGG GGCAAAAATC CGGATCCGAG AATGGAAGAT
AAGCAACAAC CCGAACTTGT TGAAAAGACG ATCGTACCAG ATCTCTCATT AGGTGCTCAT
ACCGCCTCTC TGGGACTTAT CTTTTATAAA GGCAAGGCAT TGCCTGAAAA ATACAGAAAC
GGGGCTTTTA TAGGGCAACA CGGCTCATGG AACCGTTCAA CACTTTCCGG CTATAAAGTA
GTCTTCGTTC CTTTTCAAAA CGGGAAACCG GCTGGTAGTC CGGAGGACTT CCTCACCGGA
TTCATGGCGG ATGCGGATAA AAGCGAAGTA TACGGCCGTC CCGTAGGTGT AGCAGTTGCA
GCAGATGGCG CACTGCTCGT TGCGGATGAT GCCGGTAATA CCATTTGGCA GGTCAAATAG
 
Protein sequence
MRKCLLPAAI VLLLFAACHN QPSASQSSAD STANTDTTAA AGSLPAPYAT KSVNNYSNVM 
GWHDGKTPLA PGGLTVSALA TDLKNPRWIY VMPNGDILVA ESSSKSDVGN KVKDVVSGRA
GSGNFGNSAD RITLLRDADR DGKPELRTIF LQDLNQPFGM LLLDKTFYVA NTDGILQFPY
KTGDTVITAK GKKILDLPAG GYNNHWTRNI ISNAAGNKIY VSVGSGSNNA EHGMENEHRR
AGILEINPDG SGEKIYASGL RNPVGMDWAP GTKTLWTAVN ERDGLGDDLV PDYMTSVKEG
GFYGWPYAYW GKNPDPRMED KQQPELVEKT IVPDLSLGAH TASLGLIFYK GKALPEKYRN
GAFIGQHGSW NRSTLSGYKV VFVPFQNGKP AGSPEDFLTG FMADADKSEV YGRPVGVAVA
ADGALLVADD AGNTIWQVK