| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1430 |
|---|
| Symbol | trmE |
|---|
| ID | 8357571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1741095 |
|---|
| End bp | 1742480 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963610 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_003121128 |
|---|
| Protein GI | 256420475 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.299442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGGGA ATAATCTTAC AGGATACGAC GATACAATAG TAGCCCTGGC TACAGCGCCA
GGCATAGGAG CAATAGCAGT GATCCGCCTC AATGGTACAA AAGCTATTGA CATCTGTAAC
TCCCTGTTCC CCGCCAAAGA TCTCCACCAG CAAGCTGGTC ATACCCTTCA CTTTGGATCT
ATCGTCGACC GTGGACGCAC CATCGATGAA GTCGTAGTCA GTCTGTATAA AGCCCCCCGC
TCTTACACCG GTGAAGAGAT CGTGGAAATC TCCTGTCACG GTTCCCCCTA CATCCAGCAA
CAGATTATAG ACGCCTGCAT CCATGCCGGC GCACGTATGG CGAAGCCTGG AGAATATACC
CTGCGCGCCT TCCTGAACGG CAAACTGGAC CTTACCCAGG CAGAATCCGT AGCAGATCTG
ATCGCAAGTA ACTCTGCTGC CAGTCACCAG ACGGCCATGC AGCAAATGAG GGGCGGCTTT
TCCAAAGAAT TATACTCCCT CCGGGAACAA CTGATCAGTT TCTCTGCACT GATAGAACTG
GAACTCGACT TCAGTCAGGA AGACGTAGAA TTTGCCGACC GCACGCAACT ATATCGCCTT
ATTAATGAAG CCAACGAAGT TGTTCAACAT CTGGTGGACT CCTTCCGTAT GGGAAACGTC
ATCAAAAACG GTGTTAATAC CGCTATCGTG GGTAAACCCA ACGCAGGTAA ATCCACTTTG
CTGAATACCC TGCTGAACGA AAATAGGGCC ATCGTAAGCG ATATTGCCGG CACTACTCGT
GATACCATTG AGGAGGTATT AAATATTCAG GGTGTCCTGT TCAGGCTTAT CGATACTGCA
GGTATCCGTG AAAGCGCAGA TGTGATTGAG AGCATCGGTG TACAGAAGAC AATGGAAAAG
ATCAGGGAAG CAGGTGTCGT ACTTTACCTT TTTGATGTAA ATGAAACATC GCTTTCAGAA
CTACAGGCCC AGGTGGATAC ATTCGTCAAT GAAGGTATCA ACTATCTGCT GATCGGCAAC
AAGACCGATA TTAACGGTCT GGCTGCTATG CAGGAGAAAT TTGCCACCGT TGAAGGGATC
CTGTATATAT CCGCTAAACA GCATGAACAT ATACAGGAAT TAAAAGATCG CCTCGTACAA
AAAGTAATGA GCGGCGATAT CAATACAGAA GATACGATCG TTACAAATGC CCGGCACTAT
GCAGCCTTAC AGGAAGTATT AAAAGCATTG CAGGATGTCA GGTTCGGATT GGATAGCCAG
TTACCGGGTG ATTTGTTGTC ACTGGATATC AGAAGATGCC TGCATTATCT CGGAGAGATA
ACAGGACAGA TCACCAATGA AGACCAGCTC GATTTTATAT TCAGTAAGTT CTGTATAGGA
AAATAA
|
|---|
| Protein sequence | MLGNNLTGYD DTIVALATAP GIGAIAVIRL NGTKAIDICN SLFPAKDLHQ QAGHTLHFGS
IVDRGRTIDE VVVSLYKAPR SYTGEEIVEI SCHGSPYIQQ QIIDACIHAG ARMAKPGEYT
LRAFLNGKLD LTQAESVADL IASNSAASHQ TAMQQMRGGF SKELYSLREQ LISFSALIEL
ELDFSQEDVE FADRTQLYRL INEANEVVQH LVDSFRMGNV IKNGVNTAIV GKPNAGKSTL
LNTLLNENRA IVSDIAGTTR DTIEEVLNIQ GVLFRLIDTA GIRESADVIE SIGVQKTMEK
IREAGVVLYL FDVNETSLSE LQAQVDTFVN EGINYLLIGN KTDINGLAAM QEKFATVEGI
LYISAKQHEH IQELKDRLVQ KVMSGDINTE DTIVTNARHY AALQEVLKAL QDVRFGLDSQ
LPGDLLSLDI RRCLHYLGEI TGQITNEDQL DFIFSKFCIG K
|
|---|
| |