Gene Cpin_1408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1408 
Symbol 
ID8357528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1678754 
End bp1679179 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content49% 
IMG OID644963567 
ProductRNA-binding S4 domain protein 
Protein accessionYP_003121106 
Protein GI256420453 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1188] Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGCCT TATATATTAT AGTCAATAAG ATGAAAGAAG TAGAAAAAGT AAGGCTCGAT 
AAATATCTCT GGTCCATCAG GATCTTCAAA TCCCGTTCCC TGGCCTCTGC CGGTTGTGAA
GCTGGTAGGG TGAAAATGAA CGGTGTGACA GTCAAAGCGG CCAGAAACGT GGCCCTAAAC
GATGTATATG AGATCCGGAC AGAAGGCCGT AAATGGGTGA TCCAGGTGAC CGCCCTGCTG
GCCAACCGTG TACAGTACAC AGAAGCAATT AAGTTCTATA ACGATATCAC CCCCGAGGAA
GATAAAGCAC AGGAACGTCA GGCTTCCGTA TTCCAGACCG GTAAACGCCC CAGCAAGATC
GGTCGTCCGA CTAAGAAGGA ACGCCGGGAA CTGGACGATT TCATGGGTGG CGAGGAAGAT
CTCTAA
 
Protein sequence
MPALYIIVNK MKEVEKVRLD KYLWSIRIFK SRSLASAGCE AGRVKMNGVT VKAARNVALN 
DVYEIRTEGR KWVIQVTALL ANRVQYTEAI KFYNDITPEE DKAQERQASV FQTGKRPSKI
GRPTKKERRE LDDFMGGEED L