| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1405 |
|---|
| Symbol | |
|---|
| ID | 8357525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1675518 |
|---|
| End bp | 1676741 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963564 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003121103 |
|---|
| Protein GI | 256420450 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG ACCAAGAGTA TATATACACA TTACTTCTGC GTAAGCAACT TGGCGAATTA
AGTGAAGTGG AAGATCAGTT GCTGCAAAAG GTCATGCAAA CCGATGAGCA GGTTCGTAAA
TGCTGGCATG AACAGGAACA GGCGATACTC TATACTGACA GTGCATTTCT TGATGATCTG
CGTGTAGAGC ATGACTGGTG CCAGATTGCC GCTATCCTTT CACCCCAGCC ATTACACATC
AGAATATTTC GTTTTATCAA ACGTAACAGC GCAGCAGCGG CCGTATTCCT GACACTTTCT
GCCTGTGCAG GCAGCTGGTA CGCGTTTGAA CATTATTATA AAGTGCAGTC CCCCTCCGCA
GTAAACCGCG CAGTGCTGGC ACATCGTACA CCAAAACAAT CGCCGGTCCG CAAAACAGCA
GATGTTAAAT ACACCCTGCC GGCAGATACG ACTGTCAATA TCAATACCAA TAAAGCTACC
GAACCCGTTC CCGTAGCAGG CGTAGTACAT GGTGACAGTA TAGCCTCCAT TCCATTAAAA
CGAATTACGC ACGACACCAT TTACCAAAGC AGTACCATTG AATGGAATAC CCTGACCGTA
CCGCCTAAAA CGGATTACCG CATAGAGTTA TCCGATGGCA CGGAAGTACA CCTGAATGCC
AGTTCCACAC TGCGATTTCC TTTCATCTTT CCTGGTAAGA CCAGGGAAGT ATACCTTGAA
GGGGAGGCTT ATTTCACCGT TGCACACAAT CCAAAGCAAC CTTTTATTGT GCACACAGGT
ACGACCTCCG TCATCGCATT GGGTACGGCA TTCAATGTGA ATTCTTATGA TGGCAATACC
ATCACAACTT CACTGGTTAC AGGCACTGTG GTAACTGATG TAGGCGATAG TCTGGACGTA
ACTTTGAAGC CGGGGTATGA GGCTATTTAC AGACCAGGTG AGCGTTTTAA AGTAAAACGT
TTTGACGAGA ACGTTACCCT TGGCTGGCGG GATGGTATTT TCCGCTTTCA CAACAAGCCG
CTGGAAGAAG TCATTCCTGT GCTGAAGCGC TGGTTCGGAC TGAAGGTTGC CTTTACTGCT
GCCGGCATTG CCGACATCCA CTTCTCCGGG GATCTTGACA AGGATAAACC TGTCTCCGAC
TTCCTGAATG AACTTTGTTG GGAAAAAGGG CTGGAGTATA AAATTTATGA CGGCACTGTT
CACTTTAGTA AACCCAAAGG ATAA
|
|---|
| Protein sequence | MKYDQEYIYT LLLRKQLGEL SEVEDQLLQK VMQTDEQVRK CWHEQEQAIL YTDSAFLDDL
RVEHDWCQIA AILSPQPLHI RIFRFIKRNS AAAAVFLTLS ACAGSWYAFE HYYKVQSPSA
VNRAVLAHRT PKQSPVRKTA DVKYTLPADT TVNINTNKAT EPVPVAGVVH GDSIASIPLK
RITHDTIYQS STIEWNTLTV PPKTDYRIEL SDGTEVHLNA SSTLRFPFIF PGKTREVYLE
GEAYFTVAHN PKQPFIVHTG TTSVIALGTA FNVNSYDGNT ITTSLVTGTV VTDVGDSLDV
TLKPGYEAIY RPGERFKVKR FDENVTLGWR DGIFRFHNKP LEEVIPVLKR WFGLKVAFTA
AGIADIHFSG DLDKDKPVSD FLNELCWEKG LEYKIYDGTV HFSKPKG
|
|---|
| |