Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1395 |
Symbol | |
ID | 8357514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1660619 |
End bp | 1665010 |
Gene Length | 4392 bp |
Protein Length | 1463 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644963553 |
Product | YD repeat protein |
Protein accession | YP_003121093 |
Protein GI | 256420440 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATTA ATCAGTATAT CATAAATATT AAACTATTGG CTGTCGCCAT TATTCTGCCG GCAAGTTTAT TCGCGCAGAA GCCAGGTGGA AGCCTGGGAG CCGCAACGCC TGTAACTACT CCTTCTCCAT ATACACATAC CACCATTAAT TATGTAAGAA CCTGGGAGCC GGAGGCGCCG CTGAAGGATA CGAATGCAAT TACCTCTCCA ACGAGGTTAG TCAGGGAGGT TAAACAAACT ACTGAATATC TCGACGGTTT AGGACGTGCT ATACAGAGGG TCGCGAAGGG AGTAAGTCCC AATGGAAGAG ACCTGGTACA AATGTTTATA TACGATCCAT ATGGTCGCGA ACAGTATAGT TATCTTCAAT ATACTCATCA GGCATCAGGA GATGGTAAAT TTAAGCGGGA TCCTTTTTCT GCGCAAAACT CTTTTTATAA AAATGGTATT TTAAATCCAG GACTTTCAGG AGAGAATATT TTTTATACTA AGAAGGAAAT TGAATTATCT CCCTTGGATC GGGAATTAAA AATGTATGCT CCGGGGAATA GTTGGATAAA TAGACCCGTG GAGACACGTT ATCTGGTAAA TGGAATAGGT GATTCCGTAA GAATCTGGAC GATGGGATCC ACATTTCCTG TCAGTACTAG TAGTTATGCG AATGGGCAAT TGAGCAAAAT TGTTTCAATA AATGAGCACG GAAATCAGAC GGTTGAATAT AAGGATAAAG ATAGCAGGAT TATTCTAAAA AAAATACAGA TCAGTGACGT TCCCTCTACA GGTGCATTTG GTTGGCTTTG TACTTACTAT GTATATGATG ATATGGGAAA TCTGCGATAT GTAATTCCTC CTTCTGGGGT AGAAGCAATC AAAGGTAACT GGACCATAAC AGCGGCTGTA GATACTGGCT TATGCTATCA CTATCAGTAT GACGCTCGTC AGAGGATGAT CGTTAAGCGA GCGCCAGGAG CTGGTCGTAC TTTATTGGTT TACGATAGCC GTGACAGAGT TGTATTTGCG CAAGATTCAA TACAGCGGTC CAAGGTGCCA ATGGAGTGGA TAGCAACGTT TTATGATGAT CTGAATCGTC CGACGATGAC TGCTATTTAT AAAAATACCA TCTCGCTTGA GGATTTACAG AAGAGTGTCG ATGCCGCAGT TGCTTCAGCA ACGATTTCTT ATGTAGCTCC GGCAAAAGCA GATTTAGCTG TTTATGAACA TGACGGGAGG TCTTTATACA CGGCAACAAA TAGTATTACA GTATTTGAAG ACTTTGACTC AGGTAACGGT GAAATGGTTA TGGAAACTAA ACCATCTACA GGTGATACAA TTTCTTTACT GGCAAACAAT CCACTTCCCA ATATATCTCC TTCTTTATTA ACGCCATTGG CTTATACTTT TTATGATAAC TATAACTATC CAGGGAAGCT CGCTTTTGTT GGTCTGGATA CTGCTCAATT GCAGGTCGCA GATACATTAT TCCCGGATAG AAGACCTGTA ACCAATCTTA CAGATGGTCT GGTTACAGGT GGTAGAGTGA GAGTGTTGGG AACGGATAAT TGGCTTACGA CGACAAATTA TTACGATGAT AAGGGAAGGG TGCTGCAGCT TATTAGTGAA AATAATCTTG GAGGTAAAGA TGTCATTTCA ACTCGTTACA GCTTCAAGGG TGTTATTCTC GCCAGCTATC TACGTCATCA GAATCCGAAA AGTGTAGTTC CTCAGACGAC GGTTCTGACA AGTATGACTT ATGATAATGG AGGGCGTCTA TTAAATATTA CAAAGAGATT GAATGATGAT GTCAGTAAGG AGAAAATAAT TGTCTCTAAC AGTTACGATG AGTTGGGACG TATGCGTCTT AAACGCTTAG GTGTTTCATC ATCAGGAGCC TTGCTTGATA CTTTGAACTA TACTTATAAT ATACAGGGAT GGCCACTAGG AATTAATCGG AATTTTGTTA ACAGTGGAAA TCTTACATCT AACTGGTTTG GTCAGGAGAT AAGTTATGAT TACGGTTTTA CAAACAACCA ATATAATGGC AATATTGCAG GTGTAAAGTG GAAAACAAGG GCAGATAGCA CCTATGCTTA TGGTTATAGC TATGATAGAG CAAATCGCCT GCTGAGTGCC TTTTTTACGC AAAGAAATGG CGTGAATTGG TCTCAGGGAA CGAAAGATTT TTCTGTCAGT AATTTGAGTT ACGATGCCAA TGGAAACATT AAAACCATGT TACAGAAAGG ATTGGTAGGT ACAACTAGCA AAACAATAGA TAGCCTCGTA TATACCTACT CCGCTAACAG TAACAGGCTG CTAGGTGTAA AGGATGTAGA TTCATCAATT ACAAAGTCTG CAAAGCTGGG TGACTTCATA GATCTTAATA CTGGTGTTCA GGACTATTAC TATGATAACA ATGGAAACAT GGTTGCCGAC CAGAACAAAA GAATAACTTC AATTACTTAT AATCATCTGA ATTTACCGAC TGTAATTACG ATGGTGGGAA AAGGAACGAT TACCTATACA TATGATGCCG CAGGTCGTAA ATTGTCGAAA ACAGTGATTG ATAATACAGG TAACTCTCCT AAGACTACTG TCACAGACTA TGTTGGAGCA TTTGTATATA AACAAGATAG TCTTGAATTC ATAAGTCACG AAGAGGGCAG AATAAGACCT GTTTATAAAA CAGGAGAGTC GGTTCGGTAT GCTTATGATT ATTTTGAAAA AGATCATCTC GGTAACATCA GGACTGTGCT CACAGACCAG ACTGACTTTA CTATGTACGC AGCTTCAATG GAAGTGGATG CAGGGGCGAA AGAAGCCGCT TTATTCAGTA ATATAGAAGA AACAAGGGTA GAAACTCCCA CCGGTTATCC ACAGGATAAT ACAACAGAAA AAAACAAATC AGTTGCCCGG TTAAATGGTA AGACAGGTGG GAAAAAAATT GGTCCATCAC TTGTGTTACG GGTAATGGCA GGTGATACTG TACGGGTCAA TGCGCGAGCG TTTTACAAGT CCCAGGGGCC TAAGGATGAT GATAAACAGG CTCCGGTCGA AGATATGTTG GCTGGACTTC TACAGGCATT TGGAGGGAAT TCTGTGAGAA ACGGAGAGCA TAATGTTGTA ATGGTTTCAA ATACAACACC GTTTAATAGT GATTTTTATG GTAACACATA TCAGCGATTA AAGGAAAAAA ATAATGACAA TGGGCAATCA AATCGTCCCA AGGCATATTT AAATTTTGTA CTATTTGATG ATGATTTTAA ATTGGTAGAA CAGAATAGTG GTGTACGACA GGTAAAGGCT AGTCCGGATG AGTTACAGGA ATTGGCGGTA GAGAAGATGA GTGTGGCAAA GAGCGGGTAT TTATACGTTT ATACAAGTAA TGAAAGTCAG CAGGATGTTT ATTTTGACAA TGTGATTTTA GGATTAAATA GTGGACCTTT GCTGGAGGAA ACACATTATT ATCCGTTTGG GTTAGTAATG AAAGGAATCA GCACAAAGGC CGCTGGATCT CTAGGCAATA GAATGAGGTT TAATGGAAAA GAGGCCCAGA TTGATGAATT TATGGATGGT AGTGGTTTGG AGCAATATGA TTATGGAGCT AGAAACTATG ACGCCCAATT AGGATTGTGG CATAATATCG ATCCTTTGGC AAATCTCAGC AGAAGGTGGT CGCCATATGT TTATGCATAT AATAATCCTT TACGTTTTAT AGATCCAGAT GGGATGTTAC CAGAAGATAA CTTAGACAAA AATAGTGTTG GGATGATGTC AAAGCAATCT AAAAAAATGA GTTCTGACAA CGCAGTGACG TCTGAGTCTA AAAAAGCATT AGAGAATGTC CTTAATGAGG ATGCTCTAAT AGAACGTAAA CAGATGGCAA AAAAAATGGA TGAGAACGGA TCTTTTCTCG ATATGATCTT GGGGGAACAA GGGCCAGGAA AAGGAGCAAA AAAGACTGGT AGTAAGAAGG AGAACAAAGC TGACCCCGCA CCTGAACCTC AGATTATTTC TCTCGTTAAA AGAGCACGGG TTGCGCTAAC TAATAATACG GTCCTTGTTA AGATAATGTT TAATGAAAAG ACAAATAAAA TTGAAAAATT TGATTTTTCA ATAGGAGGTA AGCATGGAGA AATTAAATCT ATCGGAGACT TCGACCAACA AATTTTCCAG GGGGTGGTCA CCTATAAGTT GTATTTCGAA GCGACATTAG GAGTAGAAGA ATCTGTATCG GCTGAAATGA CAAAAGAAGG TGGATCTTTT GGAGCGAAAA TTGGGACGGA GACTAAACAA ACAAGTGGAG AAACACATCA CGTGGTTATT TATGGTAATA TTTATAAAGG GCAAATAACG TTAAGTGGAT CATTTCTGGC ACCGGAAGAC ATCGAAGAAT AA
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Protein sequence | MSINQYIINI KLLAVAIILP ASLFAQKPGG SLGAATPVTT PSPYTHTTIN YVRTWEPEAP LKDTNAITSP TRLVREVKQT TEYLDGLGRA IQRVAKGVSP NGRDLVQMFI YDPYGREQYS YLQYTHQASG DGKFKRDPFS AQNSFYKNGI LNPGLSGENI FYTKKEIELS PLDRELKMYA PGNSWINRPV ETRYLVNGIG DSVRIWTMGS TFPVSTSSYA NGQLSKIVSI NEHGNQTVEY KDKDSRIILK KIQISDVPST GAFGWLCTYY VYDDMGNLRY VIPPSGVEAI KGNWTITAAV DTGLCYHYQY DARQRMIVKR APGAGRTLLV YDSRDRVVFA QDSIQRSKVP MEWIATFYDD LNRPTMTAIY KNTISLEDLQ KSVDAAVASA TISYVAPAKA DLAVYEHDGR SLYTATNSIT VFEDFDSGNG EMVMETKPST GDTISLLANN PLPNISPSLL TPLAYTFYDN YNYPGKLAFV GLDTAQLQVA DTLFPDRRPV TNLTDGLVTG GRVRVLGTDN WLTTTNYYDD KGRVLQLISE NNLGGKDVIS TRYSFKGVIL ASYLRHQNPK SVVPQTTVLT SMTYDNGGRL LNITKRLNDD VSKEKIIVSN SYDELGRMRL KRLGVSSSGA LLDTLNYTYN IQGWPLGINR NFVNSGNLTS NWFGQEISYD YGFTNNQYNG NIAGVKWKTR ADSTYAYGYS YDRANRLLSA FFTQRNGVNW SQGTKDFSVS NLSYDANGNI KTMLQKGLVG TTSKTIDSLV YTYSANSNRL LGVKDVDSSI TKSAKLGDFI DLNTGVQDYY YDNNGNMVAD QNKRITSITY NHLNLPTVIT MVGKGTITYT YDAAGRKLSK TVIDNTGNSP KTTVTDYVGA FVYKQDSLEF ISHEEGRIRP VYKTGESVRY AYDYFEKDHL GNIRTVLTDQ TDFTMYAASM EVDAGAKEAA LFSNIEETRV ETPTGYPQDN TTEKNKSVAR LNGKTGGKKI GPSLVLRVMA GDTVRVNARA FYKSQGPKDD DKQAPVEDML AGLLQAFGGN SVRNGEHNVV MVSNTTPFNS DFYGNTYQRL KEKNNDNGQS NRPKAYLNFV LFDDDFKLVE QNSGVRQVKA SPDELQELAV EKMSVAKSGY LYVYTSNESQ QDVYFDNVIL GLNSGPLLEE THYYPFGLVM KGISTKAAGS LGNRMRFNGK EAQIDEFMDG SGLEQYDYGA RNYDAQLGLW HNIDPLANLS RRWSPYVYAY NNPLRFIDPD GMLPEDNLDK NSVGMMSKQS KKMSSDNAVT SESKKALENV LNEDALIERK QMAKKMDENG SFLDMILGEQ GPGKGAKKTG SKKENKADPA PEPQIISLVK RARVALTNNT VLVKIMFNEK TNKIEKFDFS IGGKHGEIKS IGDFDQQIFQ GVVTYKLYFE ATLGVEESVS AEMTKEGGSF GAKIGTETKQ TSGETHHVVI YGNIYKGQIT LSGSFLAPED IEE
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