Gene Cpin_1363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1363 
Symbol 
ID8357481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1629371 
End bp1630906 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content47% 
IMG OID644963520 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003121061 
Protein GI256420408 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGCT ACGATGTTAT TATCATTGGC AGTGGTTTTG GAGGCTCGAT GGCTGCTAAA 
CCACTCGTTG ATGCCGGGAT GAAAGTGCTC ATGCTGGAGC GCGGTGACTG GGTAAAGCGC
AGTGTTGAAG AAAACTGGGG GCCAAAGGGT TCTATTGATC TTTCTCCTTT TTATGATAAA
TCTTCCCTGT TGCATGTGCC CGTTGGCGGT AATAAACCAA CCATGGGCTT GTATTCCTGC
GTAGGCGGAC CATCGGCTTT TTATGGCGGT GTATCTTTTC GTTTTCGCGA GGCCGACTTT
GAAAAGAATG AGCAAATCGA GGGTAAGGAT GCGCAAGGCT GGCCCATTAC ATATGACGAC
CTGGAAAGCT ATTACACACA AGCCGAGGGC ATATTAAACA TATCGGGCGA AACGGATATT
GATCCAACCG AACCACGCCG CAGTGCGCCA TTGCCGCAAC ATGCACCTGC TTTGGCCAAT
ATATCCCAAA AGGTGAAATC CAGCGCGCAA AAATTAGGGC TGCATCCTTT TCAGCTGCCT
TTGGCGATTA ATTACGAAGA TACAAGCCGC CAAACCTGTC TTAGCTGCAA GACCTGCGAT
ACTTTTGCCT GTGCCGTAAG CGCGAAGAAC GACCTGGCTA CCATCCTGAT CCCTCAGCTG
ACGGCAAACG GTATGGAGCT ACAGCACAAT ATGGTAGTGA CAAGATTAAA CGTACTAAAT
CGTCGTATTG TAAGCATCGA GTGCGTATCG AAAACATCCA AACAGTCGTA TACATTTAAG
GCCGATAAAT TTATACTGGC TGCCGGTGCA TTAGGTACAC CGCATATCCT GTTATCATCG
GGTCTGCAAC ACTACAACCC CGGCGGCGAT GTAGTGGGCC GCTACCTGAT GCGGCATTTA
AATGCTATCA TATTTGGTAT TTTCCCCGGC GTTGCCGATA AGGAAGGCCG TTTTCATAAA
CAGCTGGCTA TACTGGATTA TTATTTTGGT CACCCCCAAG CCCCCGGATT TAATAAACTG
GGTAGTTTAC AGCAAATGCC AACCCCTCCC GCAAGTGTAG TTGAAAATGA ATTAAAGGGC
GTATTAGGGA AGGTACTTAG TCCGGCGGTA AAGTTATTAA GTGGCTTGCT GGCCATTGTT
GAAGACCAAC CGCAATACAA TAATGCGCTA ACGATTGATG CCGCTTTTTC CGATGAATTT
GGTTTGCCCC GAGTTGTTAT CAACCACAGC TATAGCGACA GGGATAACGC CGCAATGAAA
ATTTTAACCG AAGAGGGTAA AAAGATCATG AAAGGGGCGG GGGCGCTCAC CCATTATATA
CATAATATTC GTACGTTTTC ACACGCGGTG GGTACAGTAC GTATGGGTTT GAACGAGAAG
ACATCAGCCC TTGACGAGCA TTGCCATTTC AGGGGAATAG ATAATTTATA TGTTACCGAT
GGTAGCGTAA TGCCAACATC GGCAGCGTTA AACCCAAGCC TAACCATTGC CGCAAATGCA
CTACGGGTAG GCGAATTTAT TACCAGATTA AATTGA
 
Protein sequence
MNSYDVIIIG SGFGGSMAAK PLVDAGMKVL MLERGDWVKR SVEENWGPKG SIDLSPFYDK 
SSLLHVPVGG NKPTMGLYSC VGGPSAFYGG VSFRFREADF EKNEQIEGKD AQGWPITYDD
LESYYTQAEG ILNISGETDI DPTEPRRSAP LPQHAPALAN ISQKVKSSAQ KLGLHPFQLP
LAINYEDTSR QTCLSCKTCD TFACAVSAKN DLATILIPQL TANGMELQHN MVVTRLNVLN
RRIVSIECVS KTSKQSYTFK ADKFILAAGA LGTPHILLSS GLQHYNPGGD VVGRYLMRHL
NAIIFGIFPG VADKEGRFHK QLAILDYYFG HPQAPGFNKL GSLQQMPTPP ASVVENELKG
VLGKVLSPAV KLLSGLLAIV EDQPQYNNAL TIDAAFSDEF GLPRVVINHS YSDRDNAAMK
ILTEEGKKIM KGAGALTHYI HNIRTFSHAV GTVRMGLNEK TSALDEHCHF RGIDNLYVTD
GSVMPTSAAL NPSLTIAANA LRVGEFITRL N