Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1358 |
Symbol | |
ID | 8357476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1626373 |
End bp | 1626954 |
Gene Length | 582 bp |
Protein Length | 193 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644963516 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003121057 |
Protein GI | 256420404 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACTT ATGGTAATAT GTCGGATGCA GCATTGGCGG ACCTTCTCAG GTCTGGCGAC AGATCCGCAT TTGAAGAAAT CTACCATCGT TTTAAGTTCA TTCTACATAA CCATGCCTGG CAGAAAACCA GGGATGAAGA AGAAGCCAAA GATGCTATCC AGGAGGTTTT TACCTCCTTA TGGGCGAAGA GAGACACGAT CAACGTCGGC AGTAATCTGG CGGGATACCT GTACGCCAGC GTCCGTAATC ACATCCTGAA CAACATTGCA CATAAAGAAG TACAGGACAA ATATCTTACC TCCATCAGGC GGTTCACGGA AGAACAAACA GTTATTACAG ACCACCGGGT ACGGGAAAAC CTTTTTACAG CGCTCATAGA AAAGGAAATA GCGGCTTTAC CTCCGCGGAT GCGGGAGGTA TTTGAACTGA GCCGCAAACA CCACCTGAGC CACAAAGAGA TCGCTCAGAT CATGGGAACA ACAGAGCAGA CTGTCAAAAA GCAAATGACC GTCGCCCTAA AGGCACTACG CAGGAAATTC GGGGTAATGA CCTGGGTGTT GCTCTATTTC TTCTACCGGT AA
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Protein sequence | MNTYGNMSDA ALADLLRSGD RSAFEEIYHR FKFILHNHAW QKTRDEEEAK DAIQEVFTSL WAKRDTINVG SNLAGYLYAS VRNHILNNIA HKEVQDKYLT SIRRFTEEQT VITDHRVREN LFTALIEKEI AALPPRMREV FELSRKHHLS HKEIAQIMGT TEQTVKKQMT VALKALRRKF GVMTWVLLYF FYR
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