Gene Cpin_1358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1358 
Symbol 
ID8357476 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1626373 
End bp1626954 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content47% 
IMG OID644963516 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003121057 
Protein GI256420404 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACTT ATGGTAATAT GTCGGATGCA GCATTGGCGG ACCTTCTCAG GTCTGGCGAC 
AGATCCGCAT TTGAAGAAAT CTACCATCGT TTTAAGTTCA TTCTACATAA CCATGCCTGG
CAGAAAACCA GGGATGAAGA AGAAGCCAAA GATGCTATCC AGGAGGTTTT TACCTCCTTA
TGGGCGAAGA GAGACACGAT CAACGTCGGC AGTAATCTGG CGGGATACCT GTACGCCAGC
GTCCGTAATC ACATCCTGAA CAACATTGCA CATAAAGAAG TACAGGACAA ATATCTTACC
TCCATCAGGC GGTTCACGGA AGAACAAACA GTTATTACAG ACCACCGGGT ACGGGAAAAC
CTTTTTACAG CGCTCATAGA AAAGGAAATA GCGGCTTTAC CTCCGCGGAT GCGGGAGGTA
TTTGAACTGA GCCGCAAACA CCACCTGAGC CACAAAGAGA TCGCTCAGAT CATGGGAACA
ACAGAGCAGA CTGTCAAAAA GCAAATGACC GTCGCCCTAA AGGCACTACG CAGGAAATTC
GGGGTAATGA CCTGGGTGTT GCTCTATTTC TTCTACCGGT AA
 
Protein sequence
MNTYGNMSDA ALADLLRSGD RSAFEEIYHR FKFILHNHAW QKTRDEEEAK DAIQEVFTSL 
WAKRDTINVG SNLAGYLYAS VRNHILNNIA HKEVQDKYLT SIRRFTEEQT VITDHRVREN
LFTALIEKEI AALPPRMREV FELSRKHHLS HKEIAQIMGT TEQTVKKQMT VALKALRRKF
GVMTWVLLYF FYR