Gene Cpin_1357 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1357 
Symbol 
ID8357475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1625338 
End bp1626267 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content46% 
IMG OID644963515 
ProductABC transporter related 
Protein accessionYP_003121056 
Protein GI256420403 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGACAAT ACATCGTAAG AACAGCTCAT TTATATCACA GATATAACAG GCAATGGGCT 
ATACAGGATA TTAATATTTC TATCGGTCAT ACCGGCGTAC TGGGACTGTT AGGTTCAAAT
GGTGCGGGAA AATCCACCAC CATGAACATC TTATGCGGCG TACTGAACCA GACAACGGGG
AAAGTCTATA TAGATGATAC CGATCTGCAG GAGTACCCGG AAAAGGCTAA AAGATTGCTG
GGGTTCCTCC CTCAACACGC ACCACTACAT CTGGACCTGA CAGTGGACGA ATACCTTACC
TATTGCGCAC ATATCAGGGA TATTCCTGCA AAAGCAGTTA AATCGGCCGT GGCAGCTGTA
AAAGATAAAT GCGGCGTCAC AGCTTTCGGT AAACGTCTGC TGAGTAATCT TTCCGGTGGT
TACCGGCAGC GGGTAGGCAT CGCTCAGGCC ATCATTCACA AGCCCAAACT TGTTGTACTC
GATGAACCTA CCAACGGACT TGATCCTATT CAGATCAAGG AAGTACGTCA TCTGATAAGA
GAGATTGCAG AAGAACGGGC AGTCATTTTC TCCTCTCATA TTCTGTCTGA AGTGCAGGCT
ACCTGTAATG AAATCCGCAT GATAGAAGGC GGGCAGATCG TATTTTCCGA TACTATGGAG
GCATTTAATA ATTACATTCT ACCTAACTCC ATGATCGTTG CGATGGACAA TCCCCCTGCA
ATGGAAGAAC TGGCCATCAT ACCAGGCGTC AATAAGGTGG AACTACTGCA CGACCAGCGG
ATCCGTATAC ATTTCAGCGG TTCCTCCACT ATCTCTCAGC AGATCGTACA TATGAGTGTC
GCACACGACT GGCAGCTCAA TGAAGTAACA CCCGAAAAAA GCTCACTGGA CGAAATATTT
GCTCAGCTCT CTAACCGGAA TTTTAAATGA
 
Protein sequence
MGQYIVRTAH LYHRYNRQWA IQDINISIGH TGVLGLLGSN GAGKSTTMNI LCGVLNQTTG 
KVYIDDTDLQ EYPEKAKRLL GFLPQHAPLH LDLTVDEYLT YCAHIRDIPA KAVKSAVAAV
KDKCGVTAFG KRLLSNLSGG YRQRVGIAQA IIHKPKLVVL DEPTNGLDPI QIKEVRHLIR
EIAEERAVIF SSHILSEVQA TCNEIRMIEG GQIVFSDTME AFNNYILPNS MIVAMDNPPA
MEELAIIPGV NKVELLHDQR IRIHFSGSST ISQQIVHMSV AHDWQLNEVT PEKSSLDEIF
AQLSNRNFK