| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1293 |
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| Symbol | |
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| ID | 8357409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 1543463 |
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| End bp | 1544698 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644963449 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_003120992 |
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| Protein GI | 256420339 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.801665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAGT CCAAAATCCG TTGCTCATTT TGCAACCGTT CAAAAGATGA AGTGCAGATA
CTGATTGCTG GTGCTGAAGG TCATATCTGT GAGAACTGTG TCGCAAACGC GCAGGAAATC
ATAGAACAGG AGCTGTTTCA GCAACAAGGC AAGAAAGCGC CTTCCCACTT CGTTCCTAAG
GTGGCGAAGC CGGTAGAGAT TAAGAAATTC CTGGATGAAT ATGTAATTGG ACAGGACGAC
GCGAAAAAAA TACTGGCCGT TGCCGTTTAT AACCACTACA AACGTCTGAA TCAACAAGTT
GGTGATGACG ATGTGGAAAT CGAGAAATCC AATATCATCA TGGTAGGAGA AACCGGTACG
GGTAAAACCC TGCTGGCTAA ATCTATCGCA CGTCTGCTGA ATGTACCGTT TACCATCGTA
GATGCGACCG TATTTACGGA AGCAGGTTAC GTAGGTGAAG ACGTAGAAAG CATCCTGACC
CGCCTGTTAC AGGTATGTAA CTACGATGTA GAGGCTGCTG AACGTGGTAT TGTATATATC
GATGAGATCG ATAAGATCGC ACGTAAAAGC GATAACCCTT CCATCACCCG CGACGTAAGC
GGTGAAGGTG TACAACAGGG TCTGCTCAAA CTGCTGGAAG GTACCGAAGC ACTCGTACCA
CCACAGGGCG GTCGTAAACA CCCTGAGCAG AAACTTATCA AAGTAAATAC ACAGAATATC
CTGTTTATAT GCGGTGGCGC ATTCGACGGC GTTGATAAAA TCATCAGCCG CAGGGTGCAG
ACACACAGTA TCGGCTTCAC CGTTAACACT GACAGAGAAG AAGAGAACAA AAAGCACATT
CTTCGCTACA TCAATTCCCA GGATCTCAAG GCTTTCGGTC TGATCCCTGA ATTGCTGGGT
CGTCTGCCGG TAGTGACTTA CCTGAACTCA CTCGATCATG AAGCGCTGAA AGCTATTCTG
ACCGAGCCGA AAAATGCACT GGTAAAACAA TACAAGAAAC TGTTCAAAGT GGAAGGTATT
GAGCTGGTAA TCGAAGACGA TGCAGTAGAT TATATCGTTG AGAAAGCAAT GGAATATAAA
CTCGGCGCAC GTGGTCTCCG CTCCATCTGT GAAGTGGTAC TGAGCGACGC AATGTTTAAC
CTGCCTTCTT CTAGTGAAAG TACCTTTGTA CTGACAAGGG CTTATGCAGA AGAAAGACTG
GACAAATCGA CTCTCGTACA GCTGAAAGTC GCTTAA
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| Protein sequence | MKESKIRCSF CNRSKDEVQI LIAGAEGHIC ENCVANAQEI IEQELFQQQG KKAPSHFVPK
VAKPVEIKKF LDEYVIGQDD AKKILAVAVY NHYKRLNQQV GDDDVEIEKS NIIMVGETGT
GKTLLAKSIA RLLNVPFTIV DATVFTEAGY VGEDVESILT RLLQVCNYDV EAAERGIVYI
DEIDKIARKS DNPSITRDVS GEGVQQGLLK LLEGTEALVP PQGGRKHPEQ KLIKVNTQNI
LFICGGAFDG VDKIISRRVQ THSIGFTVNT DREEENKKHI LRYINSQDLK AFGLIPELLG
RLPVVTYLNS LDHEALKAIL TEPKNALVKQ YKKLFKVEGI ELVIEDDAVD YIVEKAMEYK
LGARGLRSIC EVVLSDAMFN LPSSSESTFV LTRAYAEERL DKSTLVQLKV A
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