Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1271 |
Symbol | |
ID | 8357387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1521089 |
End bp | 1523302 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644963427 |
Product | ABC transporter related |
Protein accession | YP_003120970 |
Protein GI | 256420317 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGATCAGAT TTTCCTCATT TCCGTTCTTC AGGCAGCTGG ACCAGATGGA CTGCGGAGCA GCCTGTCTGA AGATGATCTG TGCTTTTTAC AAAAAGAATT ATTCCATTCA GCAGCTCAGG GAAATGTCGG GTATCACCAG ACAGGGCGTT TCTGTACTGG GGCTTTGCGA CGCCGCGGAA CAGATCGGGA TGAAAACACT GGCGCTCAAT ATCAGTTTTG AGTCGCTGGT GAACGACGTA CCGCTGCCTT GTATCGTACA CTGGCGGCAG CGACATTTTG TGGTGGTCTA TAAGACAGAT GATCAGCATA TCTGGGTGGC AGATCCTGCT TTCGGTAAGG TAAAATATAC CCACGCAAAG TTTCTGGAAG GCTGGTTATA CAACAAGAAG ACTAAGAAAG AGGAGGAACA GGAAGGATTT GCCCTGTTTT TAGAACCTTC TGCGGAGTTT TATAATAGAG AGGACCAAGT AGCAGGGCGA CCTCTTGATC TGCGATTTTT GCTGCCTTAT TTGCGCTCAC ATAAGCAGAT ACTCTATCAG GTGATGATCG GAGTACTGAT TCTTTCTTTT ATACAGGTCG TTTTCCCTTT TCTGACAAAG GCGCTGGTCG ATAAAGGTAT CCGGTTTAAT AATCTCAATT TTGTATACCT GATTCTAGCC GGGCAACTGG TGTTATTTCT GTCACAGACG GGGGCCGAAA TAGTGCGCCG CTGGCTGTTG CTGTACATGA GTAAGCGTGT AAATATCGCC ATCGTTTCCG ACTTCCTGGT GAAGATGATG AAACTGCCGA TCGCGTTTTT TGATTCCAAA ATGATCACTG ATCTTATTCA GCGTATAGAA GATCAGAAGC AGATAGATAC CTTCTTATCC AATACCTCAC TTAGTGTATT GTTTTCCCTG ATCAACATAT TGTTGTTCGG CACAGTACTG TGTGTATTCA GCTTTCCTTT ATTCCTGATT TTCCTGGCGG GGAGTACGTT GTACTTTACC TGGATCATGT TGTTTGTAAA AAAGCGGGCT GTCCTGAGTT ATAAAAGAAG GGACGAGTCA GTAGAAAACA GGAGTAGTAT TCTTGAGATC ATGCATGGTA TCCAGGAAGT GAAACTGAAT AATAGTGAGC GCCGACGCAG ATGGGAGTGG GAGTCTGTTC AGAACAGGGT GTATAACACA GCGGTGAAGG AATTGCGCCT GGAGCAGTTA CAGGTAGTAG GTGGTAATTT CCTCCTGCAG CTGATGAATA TCATTATCAC TTTTGTGGCT GCCTGGTCAG TAATAGAAGG TAGAATTACC CTAGGTGTGA TGCTGGCCAC ACAATACATC ATCGGACAAC TGGCTACGCC GCTGAATAGT TTTGTGGCAT TCATCCATGG CGCCGCAGAA GCCCGTATCA GTATAGAGCG CATAGGAGAG GTACTGAATG TGGAAGAGGA AGATAAACAG AAGCATACTT TCGATGTATC TGACGAAGAA AATGATCTGG TGCTGGATAA TGTCTCCTTC CGTTATGGAA GCGCCAGTTC GCGGCTGGTA CTAAAGAATA TCAGTCTGAC CATTCCCCGG GGAAAAGTAA CGGCTATAGT GGGAACCAGT GGTAGCGGAA AAACAACCCT GATGAAACTA TTGCTGAAGT TTTATGACCC TACTTCCGGT AGCATTAATC TTGGTGACAA ATCACTGGAA GGTCTGGACA GCCGTCACTG GCGTAGCAAC TGTGGTGTGG TGATGCAGGA CGGGTTCATT TTTGCGGATA CTGTACTACG CAATATTACA GAGTCGGATA ACGATTATAC GATTGATAAA GAAAGGTTGC AGCAGGCGGT GCATGTTGCC AACATTGAAG ATATGATCGA GCAATTACCT TCCGGTTATC ATACGAATCT GAGTCACGGG GGCATTGCTT TAAGTGGTGG GGAATACCAG CGTGTATTGA TCGCGCGGGC GGTCTATAAA GGTCCGGCCT TCCTGTTCTT TGACGAGGCA ACCAGTTCGC TGGACGCTAA TAATGAAAAA GTGATCATGG AGAATCTGCA GGAGTTTTTT AAAGGGAGGA CAGTTGTGAT TATTGCACAC CGTTTAAGTA CCGTAAAACA TGCGGATAAG ATCATCGTTC TGGATAAAGG AGAGATCATA GAAGAAGGTG ATCATACGGA GCTGGTGGCG CTGAAGCAAC ATTACTTCAA ACTTGTAAAG AATCAACTGG AACTGGGAAA ATGA
|
Protein sequence | MIRFSSFPFF RQLDQMDCGA ACLKMICAFY KKNYSIQQLR EMSGITRQGV SVLGLCDAAE QIGMKTLALN ISFESLVNDV PLPCIVHWRQ RHFVVVYKTD DQHIWVADPA FGKVKYTHAK FLEGWLYNKK TKKEEEQEGF ALFLEPSAEF YNREDQVAGR PLDLRFLLPY LRSHKQILYQ VMIGVLILSF IQVVFPFLTK ALVDKGIRFN NLNFVYLILA GQLVLFLSQT GAEIVRRWLL LYMSKRVNIA IVSDFLVKMM KLPIAFFDSK MITDLIQRIE DQKQIDTFLS NTSLSVLFSL INILLFGTVL CVFSFPLFLI FLAGSTLYFT WIMLFVKKRA VLSYKRRDES VENRSSILEI MHGIQEVKLN NSERRRRWEW ESVQNRVYNT AVKELRLEQL QVVGGNFLLQ LMNIIITFVA AWSVIEGRIT LGVMLATQYI IGQLATPLNS FVAFIHGAAE ARISIERIGE VLNVEEEDKQ KHTFDVSDEE NDLVLDNVSF RYGSASSRLV LKNISLTIPR GKVTAIVGTS GSGKTTLMKL LLKFYDPTSG SINLGDKSLE GLDSRHWRSN CGVVMQDGFI FADTVLRNIT ESDNDYTIDK ERLQQAVHVA NIEDMIEQLP SGYHTNLSHG GIALSGGEYQ RVLIARAVYK GPAFLFFDEA TSSLDANNEK VIMENLQEFF KGRTVVIIAH RLSTVKHADK IIVLDKGEII EEGDHTELVA LKQHYFKLVK NQLELGK
|
| |