Gene Cpin_1238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1238 
Symbol 
ID8357354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1485304 
End bp1486053 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content47% 
IMG OID644963394 
Productdimethyladenosine transferase 
Protein accessionYP_003120937 
Protein GI256420284 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0030] Dimethyladenosine transferase (rRNA methylation) 
TIGRFAM ID[TIGR00755] dimethyladenosine transferase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATACAC TCAAAAAATC GCTGGGACAG CATTTCCTGA AGGATGAAAA TATCTGCAGG 
AAAATTGTGG AGGCATTACC TGTAAATCCC GGGCAGCAGA TAGTAGAAGT CGGCCCCGGA
GCAGGCGCCA TCACCAAATA CCTGCTGCAG ATACCGGATG TTCACTTCAA GGCAGTAGAG
CTGGACACTG AAAAGGTACA GTACCTGGAA AAGACCTATC CCGCTATTCA GGGCAAGATC
ATCAATGAAA GTATTCTCGA TACCCCTGTT CCTTACCAGG GCGAGTTCAA TCTGATCGGC
AATTTCCCTT ATAACATTTC TTCGCAGATC ATGTTCCGTG TCCTGGAATG GCGCCAGCAG
GTACCTTCCG TGGTGGGTAT GTTCCAGAAG GAGGTAGCAT TGCGCATTGC GGCTACGAAA
GGGAAGGAGT ATGGTATCCT GAGTGTGCTG ACACAGGCAT TTTACAAGGT GGAATACCTG
TTTGAAGTGC ATGAGAACTG TTTTAATCCG CCGCCGAAGG TAAAATCCGC CGTTATCAGG
CTGGACAGGC TGGAAACGTC GTATGATATC GCCAGTGAAC GGAAGTTTTT TGTGCTGGTA
AAAACGGCTT TCGGACAGCG GCGCAAGCAG TTGCGTAATC CGTTAAAGGG TTTATTTGCT
AAAGAAGTTT TGCAGGACAG CATTTTCAAC AAAAGAGCAG AAGAGTTGAG TGTGGCTGAT
TTTGCAGCAT TATCCCATAA GATGTTATGA
 
Protein sequence
MYTLKKSLGQ HFLKDENICR KIVEALPVNP GQQIVEVGPG AGAITKYLLQ IPDVHFKAVE 
LDTEKVQYLE KTYPAIQGKI INESILDTPV PYQGEFNLIG NFPYNISSQI MFRVLEWRQQ
VPSVVGMFQK EVALRIAATK GKEYGILSVL TQAFYKVEYL FEVHENCFNP PPKVKSAVIR
LDRLETSYDI ASERKFFVLV KTAFGQRRKQ LRNPLKGLFA KEVLQDSIFN KRAEELSVAD
FAALSHKML