| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1225 |
|---|
| Symbol | |
|---|
| ID | 8357341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1466633 |
|---|
| End bp | 1467379 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963381 |
|---|
| Product | protein of unknown function DUF1003 |
|---|
| Protein accession | YP_003120924 |
|---|
| Protein GI | 256420271 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4420] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000330099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0160942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGT TTATCAGTGA TCTATCCGGG AAAACATACC CTGCTTCTGA GAAGGTTCAT
TGCCGGGCTG TCAGCAAGAA TGTCCTGGAG CTTTTACAGA AAGAGCACCC TCAGATTACC
AGTAAATCCC ACCTCGCAGT CTCCGAAATA AATGAGTACC GGCAAAAGTA CCTGGAACAC
CTGTTTTCAA AGGAAATCGG TGCGTTGACG GAGATGGAGA AAATGGTGCT GGATAAGCTA
AAAGAGCATC AGACGCTGAC TGATAAACTG GATGACGGAG AAAACCCGGC CACATTTTCC
TTCGGACAGC GGGTAGCCGA TAAGATCGCT TCTTTTGGCG GTAGCTGGAC TTTCATCATT
TCCTTCCTGG TATTCATTCT GCTCTGGATG GCGGCCAACA TTTACTGGCT GGCTAACAAG
GGCTTTGACC CCTACCCTTT TATCCTGTTG AACCTCATTC TGTCCTGTCT TGCTGCCTTA
CAGGCGCCGG TAATCATGAT GAGCCAGAAC CGGCAGGAAG AAAAGGACCG TCAAAGGTCG
AAAAACGATT ATATGATCAA CCTTAAATCC GAACTGGAAG TAAGGATCCT GCATGAAAAG
ATCGATCACC TGATCCTTCA TCAACAGCAG GACATGATGG AGATACAGCA AACACAGCTG
GAAATGCTGA ATGAAGTGAA CCAGGCATTG AAAAAAATCG CGGGAAACGG TAATAACCAT
AAACATACGA ATGAAAAACC TGTTTAA
|
|---|
| Protein sequence | MQTFISDLSG KTYPASEKVH CRAVSKNVLE LLQKEHPQIT SKSHLAVSEI NEYRQKYLEH
LFSKEIGALT EMEKMVLDKL KEHQTLTDKL DDGENPATFS FGQRVADKIA SFGGSWTFII
SFLVFILLWM AANIYWLANK GFDPYPFILL NLILSCLAAL QAPVIMMSQN RQEEKDRQRS
KNDYMINLKS ELEVRILHEK IDHLILHQQQ DMMEIQQTQL EMLNEVNQAL KKIAGNGNNH
KHTNEKPV
|
|---|
| |